Evidence map›Paper›PMID 30634714›Full record

ArticleNon-coding RNA2019

Gammaherpesvirus Readthrough Transcription Generates a Long Non-Coding RNA That Is Regulated by Antisense miRNAs and Correlates with Enhanced Lytic Replication In Vivo.

Mehmet Kara, Tina O'Grady, Emily R Feldman, April Feswick, Yiping Wang, Erik K Flemington, Scott A Tibbetts

Open access · goldAbstract read
In one paragraph

Article in Non-coding RNA, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Mehmet KaraDepartment of Molecular Genetics & Microbiology, UF Health Cancer Center, University of Florida, Gainesville, Florida, 32610, USA. mhmtt.kara@gmail.com.ORCID 0000-0002-9646-4584
Tina O'GradyLaboratory of Protein Signaling and Interactions, GIGA-R (MBD), University of Liège, 4000, Liège, Belgium. christina.ogrady@ulg.ac.be.ORCID 0000-0002-1283-0293
Emily R FeldmanDepartment of Molecular Genetics & Microbiology, UF Health Cancer Center, University of Florida, Gainesville, Florida, 32610, USA. emy.feldman@gmail.com.
April FeswickDepartment of Molecular Genetics & Microbiology, UF Health Cancer Center, University of Florida, Gainesville, Florida, 32610, USA. feswicka@ufl.edu.
Yiping WangDepartment of Molecular Genetics & Microbiology, UF Health Cancer Center, University of Florida, Gainesville, Florida, 32610, USA. yipingwang@ufl.edu.
Erik K FlemingtonDepartment of Pathology, Tulane Cancer Center, Tulane University, New Orleans, Louisiana, 70112, USA. erik@tulane.edu.
Scott A TibbettsDepartment of Molecular Genetics & Microbiology, UF Health Cancer Center, University of Florida, Gainesville, Florida, 32610, USA. stibbe@ufl.edu.
University of Florida Health · USTulane University · USUniversity of Liège · BE

Funding

"Project 3" MHV68 IncRNA/miRNA interaction in latency and lympomagenesisP01CA214091 · NCI · UNIVERSITY OF FLORIDA · PI Scott A. Tibbetts · 2017 to 2026
$15.9M
BASIC MICROBIOLOGY &INFECTIOUS DISEASEST32AI007110 · NIAID · UNIVERSITY OF FLORIDA · PI Stephanie M Karst · 1985 to 2026
$4.3M
Role of MHV68 miRNAs in latencyand pathogenesisR01AI108407 · NIAID · UNIVERSITY OF FLORIDA · PI TIBBETTS, SCOTT A. · 2015 to 2019
$2.0M
Epstein Barr virus antisense transcriptionR01AI106676 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI FLEMINGTON, ERIK K · 2014 to 2018
$1.9M
Action de Recherches Concertee (ARC), Uliege TOFonds De La Recherche Scientifique - FNRS TONational Institute of Allergy and Infectious Diseases AI106676NCI NIH HHS CA214091NCI NIH HHS P01 CA214091NIAID NIH HHS R01 AI108407NIAID NIH HHS T32 AI007110U.S. Department of Defense W81XWH-16-1-0318
6 · The paper itself

Abstract

Gammaherpesviruses, including the human pathogens Epstein⁻Barr virus (EBV) and Kaposi's sarcoma-associated herpesvirus (KSHV) are oncogenic viruses that establish lifelong infections in hosts and are associated with the development of lymphoproliferative diseases and lymphomas. Recent studies have shown that the majority of the mammalian genome is transcribed and gives rise to numerous long non-coding RNAs (lncRNAs). Likewise, the large double-stranded DNA virus genomes of herpesviruses undergo pervasive transcription, including the expression of many as yet uncharacterized lncRNAs. Murine gammaperherpesvirus 68 (MHV68, MuHV-4, HV68) is a natural pathogen of rodents, and is genetically and pathogenically related to EBV and KSHV, providing a highly tractable model for studies of gammaherpesvirus biology and pathogenesis. Through the integrated use of parallel data sets from multiple sequencing platforms, we previously resolved transcripts throughout the MHV68 genome, including at least 144 novel transcript isoforms. Here, we sought to molecularly validate novel transcripts identified within the

Indexed as

gammaherpesviruslncRNAMHV68non-coding RNAvirus

Identifiers

PMID30634714
PMCPMC6468771
OpenAlexW2910023324

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.