Evidence map›Paper›PMID 30633749›Full record

ArticlePloS one2019

Characterisation of a type II functionally-deficient variant of alpha-1-antitrypsin discovered in the general population.

Mattia Laffranchi, Emma L K Elliston, Fabrizio Gangemi, Romina Berardelli, David A Lomas, James A Irving, Annamaria Fra

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.6field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Mattia LaffranchiDepartment of Molecular and Translational Medicine, University of Brescia, Brescia, Italy.ORCID 0000-0002-0556-6068
Emma L K EllistonUCL Respiratory and the Institute of Structural and Molecular Biology, University College London, London, United Kingdom.
Fabrizio GangemiDepartment of Molecular and Translational Medicine, University of Brescia, Brescia, Italy.ORCID 0000-0001-9389-651X
Romina BerardelliDepartment of Molecular and Translational Medicine, University of Brescia, Brescia, Italy.
David A LomasUCL Respiratory and the Institute of Structural and Molecular Biology, University College London, London, United Kingdom.
James A IrvingUCL Respiratory and the Institute of Structural and Molecular Biology, University College London, London, United Kingdom.ORCID 0000-0003-3204-6356
Annamaria FraDepartment of Molecular and Translational Medicine, University of Brescia, Brescia, Italy.ORCID 0000-0002-4327-3004
University of Brescia · ITInstitute of Structural and Molecular Biology · GB

Funding

Department of HealthMedical Research Council MR/N024842/1Wellcome Trust
6 · The paper itself

Abstract

Lung disease in alpha-1-antitrypsin deficiency (AATD) results from dysregulated proteolytic activity, mainly by neutrophil elastase (HNE), in the lung parenchyma. This is the result of a substantial reduction of circulating alpha-1-antitrypsin (AAT) and the presence in the plasma of inactive polymers of AAT. Moreover, some AAT mutants have reduced intrinsic activity toward HNE, as demonstrated for the common Z mutant, as well as for other rarer variants. Here we report the identification and characterisation of the novel AAT reactive centre loop variant Gly349Arg (p.G373R) present in the ExAC database. This AAT variant is secreted at normal levels in cellular models of AATD but shows a severe reduction in anti-HNE activity. Biochemical and molecular dynamics studies suggest it exhibits unfavourable RCL presentation to cognate proteases and compromised insertion of the RCL into β-sheet A. Identification of a fully dysfunctional AAT mutant that does not show a secretory defect underlines the importance of accurate genotyping of patients with pulmonary AATD manifestations regardless of the presence of normal levels of AAT in the circulation. This subtype of disease is reminiscent of dysfunctional phenotypes in anti-thrombin and C1-inibitor deficiencies so, accordingly, we classify this variant as the first pure functionally-deficient (type II) AATD mutant.

Indexed as

Genetics, PopulationGenetic Variationalpha 1-AntitrypsinAmino Acid SequenceHumansModels, BiologicalMolecular Dynamics SimulationMutant ProteinsProtein DomainsProtein Structure, Secondaryalpha 1-AntitrypsinMutant Proteins

Identifiers

PMID30633749
PMCPMC6329500
OpenAlexW2951156847

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.