Evidence map›Paper›PMID 30633743›Full record

ArticlePLoS neglected tropical diseases2019

Improved DNA extraction technique from clot for the diagnosis of Chagas disease.

Holger Mayta, Yomara K Romero, Alejandra Pando, Manuela Verastegui, Freddy Tinajeros, Ricardo Bozo, Josephine Henderson-Frost, Rony Colanzi, Jorge Flores, Richard Lerner and 3 more

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Observational
  6. Review
  7. Risk Factors for Maternal Chagas Disease and Vertical Transmission in a Bolivian Hospital.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2021
    Article
  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 3 countries.

Holger MaytaInfectious Diseases Research Laboratory, Department of Cellular and Molecular Sciences, School of Science and Philosophy, Universidad Peruana Cayetano Heredia, Lima, Peru.ORCID 0000-0001-5306-628X
Yomara K RomeroInfectious Diseases Research Laboratory, Department of Cellular and Molecular Sciences, School of Science and Philosophy, Universidad Peruana Cayetano Heredia, Lima, Peru.
Alejandra PandoInfectious Diseases Research Laboratory, Department of Cellular and Molecular Sciences, School of Science and Philosophy, Universidad Peruana Cayetano Heredia, Lima, Peru.
Manuela VerasteguiInfectious Diseases Research Laboratory, Department of Cellular and Molecular Sciences, School of Science and Philosophy, Universidad Peruana Cayetano Heredia, Lima, Peru.
Freddy TinajerosA.B Prisma, Lima, Perú.
Ricardo BozoHospital Municipal Camiri, Camiri, Plurinational State of Bolivia.
Josephine Henderson-FrostMassachusetts General Hospital, Boston, Massachusetts, United States of America.
Rony ColanziHospital Universitario Japones, Santa Cruz de la Sierra, Plurinational State of Bolivia.
Jorge FloresHospital San Juan de Dios, Santa Cruz de la Sierra, Plurinational State of Bolivia.
Richard LernerPan American Zoonotic Research and Prevention, Framingham, Massachusetts, United States of America.ORCID 0000-0002-0429-8719
Caryn BernDepartment of Epidemiology and Biostatistics, University of California-San Francisco, San Francisco, California, United States of America.
Robert H GilmanInfectious Diseases Research Laboratory, Department of Cellular and Molecular Sciences, School of Science and Philosophy, Universidad Peruana Cayetano Heredia, Lima, Peru.
Chagas Working Group in Perú and Bolivia
Universidad Peruana Cayetano Heredia · PEJohns Hopkins University · USUniversidad Privada de Santa Cruz de la Sierra · BOMassachusetts General Hospital · USPrisma · PEUniversity of California, San Francisco · US

Funding

Predictors of cardiomyopathy progression in a Chagas disease cohort in BoliviaR01AI107028 · NIAID · JOHNS HOPKINS UNIVERSITY · PI GILMAN, ROBERT H · 2014 to 2023
$6.6M
Infectious Diseases Training program in Bolivia: South-South Training with PeruD43TW010074 · FIC · JOHNS HOPKINS UNIVERSITY · PI ROBERT H GILMAN, Jeffrey Tornheim · 2015 to 2026
$3.5M
Early Detection of Congenital Chagas DiseaseR01AI087776 · NIAID · JOHNS HOPKINS UNIVERSITY · PI GILMAN, ROBERT H · 2010 to 2014
$2.9M
FIC NIH HHS D43 TW010074NIAID NIH HHS R01 AI087776NIAID NIH HHS R01 AI107028
6 · The paper itself

Abstract

backgroundThe detection of Trypanosoma cruzi genetic material in clinical samples is considered an important diagnostic tool for Chagas disease. We have previously demonstrated that PCR using clot samples yields greater sensitivity than either buffy coat or whole blood samples. However, phenol-chloroform DNA extraction from clot samples is difficult and toxic. The objective of the present study was to improve and develop a more sensitive method to recover parasite DNA from clot samples for the diagnosis of Chagas disease. METHODOLOGY/PRINCIPAL

findingsA total of 265 match pair samples of whole blood-guanidine (GEB) and clot samples were analyzed; 150 were from Chagas seropositive subjects. DNA was extracted from both whole blood-guanidine samples, using a previously standardized methodology, and from clot samples, using a newly developed methodology based on a combination of the FastPrep technique and the standard method for GEB extraction. A qPCR targeting the nuclear satellite sequences was used to compare the sample source and the extraction method. Of the 150 samples from Chagas positive individuals by serology, 47 samples tested positive by qPCR with DNA extracted by both GEB and clot, but an additional 13 samples tested positive only in DNA extracted from clot. No serology-negative samples resulted positive when tested by qPCR.

conclusionsThe new methodology for DNA extraction from clot samples improves the molecular diagnosis of Chagas disease.

Indexed as

Chagas DiseaseDiagnostic Tests, RoutineDNA, ProtozoanHumansMolecular Diagnostic TechniquesReal-Time Polymerase Chain ReactionSensitivity and SpecificitySerologic TestsTrypanosoma cruziDNA, Protozoan

Identifiers

PMID30633743
PMCPMC6329489
OpenAlexW2909937443

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.