Evidence map›Paper›PMID 30633643›Full record

ArticlePhysiological genomics2019

microRNA-146a-5p association with the cardiometabolic disease risk factor TMAO.

Alisha R Coffey, Matt Kanke, Tangi L Smallwood, Jody Albright, Wendy Pitman, Raad Z Gharaibeh, Kunjie Hua, Erik Gertz, Sudha B Biddinger, Ryan E Temel and 3 more

Open access · greenAbstract read
In one paragraph

Article in Physiological genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 30 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Fifteen years of the Diversity Outbred mouse model: a review.Mammalian genome : official journal of the International Mammalian Genome Society · 2026
    Review
  5. Review
  6. Review
  7. Article
  8. Gut Molecules in Cardiometabolic Diseases: The Mechanisms behind the Story.International journal of molecular sciences · 2023
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. TMAO-Activated Hepatocyte-Derived Exosomes Impair AngiogenesisFrontiers in cell and developmental biology · 2021
    Article
  20. The Pathogenic Role of Long Non-coding RNA H19 in AtherosclerosisFrontiers in cardiovascular medicine · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 1 country.

Alisha R CoffeyCurriculum in Genetics and Molecular Biology, University of North Carolina , Chapel Hill, North Carolina.ORCID 0000-0003-1792-7999
Matt KankeDepartment of Biomedical Sciences, College of Veterinary Medicine, Cornell University , Ithaca, New York.
Tangi L SmallwoodCurriculum in Genetics and Molecular Biology, University of North Carolina , Chapel Hill, North Carolina.
Jody AlbrightNutrition Research Institute, University of North Carolina, Kannapolis, North Carolina.
Wendy PitmanDepartment of Biomedical Sciences, College of Veterinary Medicine, Cornell University , Ithaca, New York.
Raad Z GharaibehDepartment of Bioinformatics, University of North Carolina , Charlotte, North Carolina.
Kunjie HuaDepartment of Genetics, University of North Carolina , Chapel Hill, North Carolina.
Erik GertzUS Department of Agriculture, Agricultural Research Service Western Human Nutrition Research Center, Obesity and Metabolism Unit, Davis, California.
Sudha B BiddingerDivision of Endocrinology, Boston Children's Hospital, Harvard Medical School , Boston, Massachusetts.
Ryan E TemelDepartment of Pharmacology and Nutritional Sciences, University of Kentucky , Lexington, Kentucky.
Daniel PompDepartment of Genetics, University of North Carolina , Chapel Hill, North Carolina.
Praveen SethupathyDepartment of Biomedical Sciences, College of Veterinary Medicine, Cornell University , Ithaca, New York.
Brian J BennettUS Department of Agriculture, Agricultural Research Service Western Human Nutrition Research Center, Obesity and Metabolism Unit, Davis, California.
University of North Carolina at Chapel Hill · USCornell University · USAgricultural Research Service · USBoston Children's Hospital · USDavid H. Murdock Research Institute · USUniversity of Kentucky · USUniversity of North Carolina at Charlotte · US

Funding

UNIV OF NORTH CAROLINA CLINICAL NUTRITION RESEARCH UNITP30DK056350 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SUSAN M. SMITH · 1999 to 2026
$31.6M
Effects of Anti-miR-33 on Atherosclerosis Regression and RCT in Nonhuman PrimatesR01HL111932 · NHLBI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI TEMEL, RYAN EUGENE · 2013 to 2017
$3.6M
Molecular and Biological Functions of miR-29 in Lipid HomeostasisR01DK105965 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SETHUPATHY, PRAVEEN · 2016 to 2019
$1.4M
Systems Genetic Studies of TMAO regulation and AtherosclerosisR01HL128572 · NHLBI · U.S. AGRICULTURAL RESEARCH SERVICE · PI BENNETT, BRIAN JOSEPH · 2015 to 2019
$1.4M
Mechanisms For PPARdelta Agonist-Induced Elevation of HDL in Non-Human PrimatesR00HL088528 · NHLBI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI TEMEL, RYAN EUGENE · 2009 to 2011
$743k
NHLBI NIH HHS R00 HL088528NHLBI NIH HHS R01 HL111932NHLBI NIH HHS R01 HL128572NIDDK NIH HHS L40 DK065607NIDDK NIH HHS P30 DK056350NIDDK NIH HHS R01 DK105965
6 · The paper itself

Abstract

Trimethylamine-N-oxide (TMAO), a microbial choline metabolism byproduct that is processed in the liver and excreted into circulation, is associated with increased atherosclerotic lesion formation and cardiovascular disease risk. Genetic regulators of TMAO levels are largely unknown. In the present study, we used 288 mice from a genetically heterogeneous mouse population [Diversity Outbred (DO)] to determine hepatic microRNA associations with TMAO in the context of an atherogenic diet. We also validated findings in two additional animal models of atherosclerosis: liver-specific insulin receptor knockout mice fed a chow diet (LIRKO) and African green monkeys fed high-fat/high-cholesterol diet. Small RNA-sequencing analysis in DO mice, LIRKO mice, and African green monkeys identified only one hepatic microRNA (miR-146a-5p) that is aberrantly expressed across all three models. Moreover, miR-146a-5p levels are associated with circulating TMAO after atherogenic diet in each of these models. We also performed high-resolution genetic mapping and identified a novel quantitative trait locus on Chromosome 12 for TMAO levels. This interval includes two genes, Numb and Dlst, which are inversely correlated with both miR-146a and TMAO and are predicted targets of miR-146a. Both of these genes have been validated as direct targets of miR-146a, though in other cellular contexts. This is the first report to our knowledge of a link between miR-146 and TMAO. Our findings suggest that miR-146-5p, as well as one or more genes at the Chromosome 12 QTL (possibly Numb or Dlst), is strongly linked to TMAO levels and likely involved in the control of atherosclerosis.

Indexed as

AnimalsAtherosclerosisChlorocebus aethiopsCholineCohort StudiesCollaborative Cross MiceDiet, AtherogenicDiet, High-FatDisease Models, AnimalFemaleGene Knockout TechniquesHypercholesterolemiaLiverMethylaminesMiceMice, KnockoutCholineMethylaminesMicroRNAsMirn146 microRNA, mouseNF-kappa BReceptor, InsulintrimethyloxamineDiversity Outbred micelipidslivermiRNATMAO

Identifiers

PMID30633643
PMCPMC6397334
OpenAlexW2908617306

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.