ArticleFrontiers in genetics2018
Comparative Analysis of Genomic Island Prediction Tools.
Article in Frontiers in genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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Who cites it
27 citing papers in PubMed.
- Fast, flexible gene cluster family delineation with IGUA.Nucleic acids research · 2026Article
- Widespread genomic islands are hotspots of genome variations and mosaicism in giant viruses.Nature communications · 2026Article
- GIPSy2: high-performance and scalable genomic island prediction software.Scientific reports · 2026Article
- Genomic profiling ofMicrobiology spectrum · 2026Article
- In Silico Analysis of Polycyclic Aromatic Hydrocarbon (PAH) Degrader fromCurrent issues in molecular biology · 2026Article
- Genomic insights into three Bacillus strains for biocontrol of tobacco black shank disease.International microbiology : the official journal of the Spanish Society for Microbiology · 2026Article
- StreamliningAntibiotics (Basel, Switzerland) · 2025Article
- BASys2: a next-generation bacterial genome annotation system.Nucleic acids research · 2025Article
- Exploring Mobile Genetic Elements in Vibrio cholerae.Genome biology and evolution · 2025Article
- Large diversity in the O-chain biosynthetic cluster within populations of Pelagibacterales.mBio · 2025Article
- Current state and future prospects of Horizontal Gene Transfer detection.NAR genomics and bioinformatics · 2025Review
- Genomic Comparative of Pseudomonas aeruginosa Small Colony Variant, Mucoid and Non-mucoid Phenotypes Obtained from a Patient with Cystic Fibrosis During Respiratory Exacerbations.Current microbiology · 2024Article
- Identification and Safety Assessment ofMicroorganisms · 2024Article
- First report of coexistence of blaKPC-2 and blaNDM-1 in carbapenem-resistant clinical isolates ofFrontiers in microbiology · 2024Article
- Genome analysis revealed a repertoire of oligosaccharide utilizing CAZymes inFood science and biotechnology · 2023Article
- Computational Insight into Intraspecies Distinctions inInternational journal of molecular sciences · 2023Article
- Genomic Signature in Evolutionary Biology: A Review.Biology · 2023Review
- Genomics ofPathogens (Basel, Switzerland) · 2023Article
- The complete and closed genome of the facultative generalist Candidatus Endoriftia persephone from deep-sea hydrothermal vents.Molecular ecology resources · 2022Article
- Deciphering microbial gene function using natural language processing.Nature communications · 2022Article
Corrections and comments
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Tools for genomic island prediction use strategies for genomic comparison analysis and sequence composition analysis. The goal of comparative analysis is to identify unique regions in the genomes of related organisms, whereas sequence composition analysis evaluates and relates the composition of specific regions with other regions in the genome. The goal of this study was to qualitatively and quantitatively evaluate extant genomic island predictors. We chose tools reported to produce significant results using sequence composition prediction, comparative genomics, and hybrid genomics methods. To maintain diversity, the tools were applied to eight complete genomes of organisms with distinct characteristics and belonging to different families.
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