Evidence map›Paper›PMID 30631105›Full record

ArticleScientific reports2019

A new recombineering system for precise genome-editing in Shewanella oneidensis strain MR-1 using single-stranded oligonucleotides.

Anna D Corts, Lynn C Thomason, Ryan T Gill, Jeffrey A Gralnick

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 60 citations in OpenAlex.

  1. Deciphering the Mto electron uptake pathway ofApplied and environmental microbiology · 2026
    Article
  2. Review
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  4. Article
  5. Article
  6. Review
  7. Multiple Rounds ofACS synthetic biology · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Recombineering in Non-Model Bacteria.Current protocols · 2022
    Article
  14. Article
  15. Article
  16. Engineering Cooperation in an Anaerobic Coculture.Applied and environmental microbiology · 2021
    Article
  17. Article
  18. Article
  19. Review
  20. Recombineering and MAGE.Nature reviews. Methods primers · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Anna D CortsBioTechnology Institute and Department of Plant and Microbial Biology, University of Minnesota-Twin Cities, St. Paul, MN, 55108, USA.
Lynn C ThomasonRNA Biology Laboratory, Basic Science Program, Leidos Biomedical Inc., Frederick National Laboratory for Cancer Research, Frederick, MD, 21702, USA.
Ryan T GillDepartment of Chemical and Biological Engineering, University of Colorado-Boulder, Boulder, CO, 80303, USA.
Jeffrey A GralnickBioTechnology Institute and Department of Plant and Microbial Biology, University of Minnesota-Twin Cities, St. Paul, MN, 55108, USA. gralnick@umn.edu.ORCID http://orcid.org/0000-0001-9250-7770
University of Minnesota · USLeidos (United States) · USUniversity of Colorado Boulder · US

Funding

NCI NIH HHS HHSN261200800001EUnited States Department of Defense | United States Navy | Office of Naval Research (ONR) N00014-17-2600U.S. Department of Energy (DOE) DE-SC0018368
6 · The paper itself

Abstract

Shewanella oneidensis MR-1 is an invaluable host for the discovery and engineering of pathways important for bioremediation of toxic and radioactive metals and understanding extracellular electron transfer. However, genetic manipulation is challenging due to the lack of genetic tools. Previously, the only reliable method used for introducing DNA into Shewanella spp. at high efficiency was bacterial conjugation, enabling transposon mutagenesis and targeted knockouts using suicide vectors for gene disruptions. Here, we describe development of a robust and simple electroporation method in S. oneidensis that allows an efficiency of ~4.0 x 10

Indexed as

ElectroporationGene EditingGenetics, MicrobialOligonucleotidesRecombination, GeneticShewanellaOligonucleotides

Identifiers

PMID30631105
PMCPMC6328582
OpenAlexW2912782548

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.