Evidence map›Paper›PMID 30629590›Full record

ArticlePloS one2019

First complete chloroplast genomics and comparative phylogenetic analysis of Commiphora gileadensis and C. foliacea: Myrrh producing trees.

Arif Khan, Sajjad Asaf, Abdul Latif Khan, Ahmed Al-Harrasi, Omar Al-Sudairy, Noor Mazin AbdulKareem, Adil Khan, Tariq Shehzad, Nadiya Alsaady, Ali Al-Lawati and 2 more

Abstract readComparative Study
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. The complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2026
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  8. Review
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  13. Complete Chloroplast Genomes ofCurrent genomics · 2023
    Article
  14. Comparative Phylogenetic Analysis forInternational journal of molecular sciences · 2023
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  15. Article
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  19. The Plastome Sequences ofInternational journal of molecular sciences · 2022
    Article
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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

12 authors.

Arif KhanNatural and Medical Sciences Research Center, University of Nizwa, Nizwa, Oman.
Sajjad AsafNatural and Medical Sciences Research Center, University of Nizwa, Nizwa, Oman.
Abdul Latif KhanNatural and Medical Sciences Research Center, University of Nizwa, Nizwa, Oman.ORCID 0000-0001-9700-8903
Ahmed Al-HarrasiNatural and Medical Sciences Research Center, University of Nizwa, Nizwa, Oman.
Omar Al-SudairyNatural and Medical Sciences Research Center, University of Nizwa, Nizwa, Oman.
Noor Mazin AbdulKareemNatural and Medical Sciences Research Center, University of Nizwa, Nizwa, Oman.
Adil KhanNatural and Medical Sciences Research Center, University of Nizwa, Nizwa, Oman.
Tariq ShehzadPlant Genome Mapping Lab, Center for Applied Genetic Technologies, University of Georgia, Georgia, United States of America.ORCID 0000-0002-5408-7282
Nadiya AlsaadyOman Animal & Plant Genetic Resources Center, The Research Council, Muscat, Oman.
Ali Al-LawatiOman Animal & Plant Genetic Resources Center, The Research Council, Muscat, Oman.
Ahmed Al-RawahiNatural and Medical Sciences Research Center, University of Nizwa, Nizwa, Oman.
Zabta Khan ShinwariDepartment of Biotechnology, Quaid-i-Azam University, Islamabad, Pakistan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Commiphora gileadensis and C. foliacea (family Burseraceae) are pantropical in nature and known for producing fragrant resin (myrrh). Both the tree species are economically and medicinally important however, least genomic understanding is available for this genus. Herein, we report the complete chloroplast genome sequences of C. gileadensis and C. foliacea and comparative analysis with related species (C. wightii and Boswellia sacra). A modified chloroplast DNA extraction method was adopted, followed with next generation sequencing, detailed bioinformatics and PCR analyses. The results revealed that the cp genome sizes of C. gileadensis and C. foliacea, are 160,268 and 160,249 bp, respectively, with classic quadripartite structures that comprises of inverted repeat's pair. Overall, the organization of these cp genomes, GC contents, gene order, and codon usage were comparable to other cp genomes in angiosperm. Approximately, 198 and 175 perfect simple sequence repeats were detected in C. gileadensis and C. foliacea genomes, respectively. Similarly, 30 and 25 palindromic, 15 and 25 forward, and 20 and 25 tandem repeats were determined in both the cp genomes, respectively. Comparison of these complete cp genomes with C. wightii and B. sacra revealed significant sequence resemblance and comparatively highest deviation in intergenic spacers. The phylo-genomic comparison showed that C. gileadensis and C. foliacea form a single clade with previously reported C. wightii and B. sacra from family Burseraceae. Current study reports for the first time the cp genomics of species from Commiphora, which could be helpful in understanding genetic diversity and phylogeny of this myrrh producing species.

Indexed as

Genome, ChloroplastGenomicsPhylogenyChromosome MappingCommiphoraExonsGene DosageGenes, PlantGenomic Structural VariationIntronsInverted Repeat SequencesMicrosatellite RepeatsPhytochemicalsPlastidsPolymorphism, Single NucleotideTreesPhytochemicals

Identifiers

PMID30629590
PMCPMC6328178

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.