Evidence map›Paper›PMID 30629176›Full record

ArticleFEMS microbiology letters2019

The genetic diversity and evolution of diatom-diazotroph associations highlights traits favoring symbiont integration.

A Caputo, J A A Nylander, R A Foster

Erratum issuedAbstract read
In one paragraph

Article in FEMS microbiology letters, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Review
  2. Article
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  8. Review
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  10. Review
  11. Article
  12. Plants (Basel, Switzerland) · 2023
    Review
  13. Article
  14. The rate and fate of NThe ISME journal · 2022
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Rethinking microbial symbioses.FEMS microbiology letters · 2020
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

A CaputoStockholm University, Department of Ecology, Environment and Plant Sciences, Stockholm, 10691, Sweden.
J A A NylanderNBIS/Swedish Museum of Natural History, Dept of Bioinformatics and Genetics, Stockholm, 10405, Sweden.
R A FosterStockholm University, Department of Ecology, Environment and Plant Sciences, Stockholm, 10691, Sweden.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Diatom diazotroph associations (DDAs) are a widespread marine planktonic symbiosis between several diatom genera and di-nitrogen (N2)-fixing bacteria. Combining single cell confocal microscopy observations and molecular genetic approaches on individual field collected cells, we determined the phylogenetic diversity, distribution and evolution of the DDAs. Confocal analyses coupled with 3-D imaging re-evaluated the cellular location of DDA symbionts. DDA diversity was resolved by paired gene sequencing (18S rRNA and rbcL genes, 16S rRNA and nifH genes). A survey using the newly acquired sequences against public databases found sequences with high similarity (99-100%) to either host (18S rRNA) or symbiont (16S rRNA) in atypical regions for DDAs (high latitudes, anoxic basin and copepod gut). Concatenated phylogenies were congruent for the host and cyanobacteria sequences and implied co-evolution. Time-calibrated trees dated the appearance of N2 fixing planktonic symbiosis from 100-50Mya and were consistent with the symbiont cellular location: symbioses with internal partners are more ancient. An ancestral state reconstruction traced the evolution of traits in DDAs and highlight that the adaptive radiation to the marine environment was likely facilitated by the symbiosis. Our results present the evolutionary nature of DDAs and provide new genetic and phenotypic information for these biogeochemically relevant populations.

Indexed as

Biological EvolutionGenetic VariationSymbiosisCyanobacteriaDiatomsNitrogen FixationPhylogenySeawater

Identifiers

PMID30629176
PMCPMC6341774

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.