Evidence map›Paper›PMID 30628877›Full record

ArticleJournal of medical microbiology2019

Bacteriophage-associated genes responsible for the widely divergent phenotypes of variants of Burkholderia pseudomallei strain MSHR5848.

David DeShazer, Sean Lovett, Joshua Richardson, Galina Koroleva, Kathleen Kuehl, Kei Amemiya, Mei Sun, Patricia Worsham, Susan Welkos

Abstract read
In one paragraph

Article in Journal of medical microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Colony morphotype variation inJournal of bacteriology · 2025
    Review
  2. InducedFrontiers in microbiology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

David DeShazer1​Bacteriology Division, United States Army Medical Research Institute of Infectious Diseases (USAMRIID), Frederick, MD, USA.
Sean Lovett2​Center for Genome Sciences, United States Army Medical Research Institute of Infectious Diseases (USAMRIID), Frederick, MD, USA.
Joshua Richardson2​Center for Genome Sciences, United States Army Medical Research Institute of Infectious Diseases (USAMRIID), Frederick, MD, USA.
Galina Koroleva2​Center for Genome Sciences, United States Army Medical Research Institute of Infectious Diseases (USAMRIID), Frederick, MD, USA.
Kathleen Kuehl3​Pathology Division, United States Army Medical Research Institute of Infectious Diseases (USAMRIID), Frederick, MD, USA.
Kei Amemiya1​Bacteriology Division, United States Army Medical Research Institute of Infectious Diseases (USAMRIID), Frederick, MD, USA.
Mei Sun4​United States Army Medical Research and Materiel Command (USAMRMC), Frederick, MD, USA.
Patricia Worsham1​Bacteriology Division, United States Army Medical Research Institute of Infectious Diseases (USAMRIID), Frederick, MD, USA.
Susan Welkos1​Bacteriology Division, United States Army Medical Research Institute of Infectious Diseases (USAMRIID), Frederick, MD, USA.
United States Army Medical Research Institute of Infectious Diseases · USUnited States Army Medical Research and Development Command · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeBurkholderia pseudomallei, the tier 1 agent of melioidosis, is a saprophytic microbe that causes endemic infections in tropical regions such as South-East Asia and Northern Australia. It is globally distributed, challenging to diagnose and treat, infectious by several routes including inhalation, and has potential for adversarial use. B. pseudomallei strain MSHR5848 produces two colony variants, smooth (S) and rough (R), which exhibit a divergent range of morphological, biochemical and metabolic phenotypes, and differ in macrophage and animal infectivity. We aimed to characterize two major phenotypic differences, analyse gene expression and study the regulatory basis of the variation. METHODOLOGY: Phenotypic expression was characterized by DNA and RNA sequencing, microscopy, and differential bacteriology. Regulatory genes were identified by cloning and bioinformatics.Results/Key findings. Whereas S produced larger quantities of extracellular DNA, R was upregulated in the production of a unique chromosome 1-encoded Siphoviridae-like bacteriophage, φMSHR5848. Exploratory transcriptional analyses revealed significant differences in variant expression of genes encoding siderophores, pili assembly, type VI secretion system cluster 4 (T6SS-4) proteins, several exopolysaccharides and secondary metabolites. A single 3 base duplication in S was the only difference that separated the variants genetically. It occurred upstream of a cluster of bacteriophage-associated genes on chromosome 2 that were upregulated in S. The first two genes were involved in regulating expression of the multiple phenotypes distinguishing S and R.

conclusionBacteriophage-associated proteins have a major role in the phenotypic expression of MSHR5848. The goals are to determine the regulatory basis of this phenotypic variation and its role in pathogenesis and environmental persistence of B. pseudomallei.

Indexed as

BacteriophagesBurkholderia pseudomalleiCloning, MolecularComputational BiologyDNA, BacterialDNA, ViralGene DuplicationGene Expression ProfilingGene Expression Regulation, BacterialGenes, RegulatorHumansMelioidosisMicroscopy, ElectronMultigene FamilyMyoviridaePhenotypeDNA, BacterialDNA, ViralRNA, BacterialbacteriophageBurkholderia pseudomalleimelioidosisphenotypic variationregulation

Identifiers

PMID30628877
PMCPMC6580998
OpenAlexW2910236512

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.