Evidence map›Paper›PMID 30627888›Full record

ArticlePlanta2019

LBD13 positively regulates lateral root formation in Arabidopsis.

Chuloh Cho, Eunkyeong Jeon, Shashank K Pandey, Se Hoon Ha, Jungmook Kim

Abstract read
PubMed Publisher
In one paragraph

Article in Planta, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.7field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Genome-Wide Analysis Elucidates the Roles ofInternational journal of molecular sciences · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Genome-Wide Identification ofInternational journal of molecular sciences · 2023
    Article
  12. Genome-Wide Analysis of theInternational journal of molecular sciences · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Phylogeny and Functions of LOB Domain Proteins in Plants.International journal of molecular sciences · 2020
    Review
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Chuloh ChoDepartment of Bioenergy Science and Technology, Chonnam National University, Gwangju, 500-757, South Korea.
Eunkyeong JeonDepartment of Bioenergy Science and Technology, Chonnam National University, Gwangju, 500-757, South Korea.
Shashank K PandeyDepartment of Bioenergy Science and Technology, Chonnam National University, Gwangju, 500-757, South Korea.
Se Hoon HaDepartment of Bioenergy Science and Technology, Chonnam National University, Gwangju, 500-757, South Korea.
Jungmook KimDepartment of Bioenergy Science and Technology, Chonnam National University, Gwangju, 500-757, South Korea. jungmkim@jnu.ac.kr.ORCID http://orcid.org/0000-0003-1735-5564
Chonnam National University · KR

Funding

National Research Foundation 2016R1A2B4015201National Research Foundation 2017R1A4A1015620Rural Development Agriculture PJ013220
6 · The paper itself

Abstract

MAIN

conclusionLateral Organ Boundaries Domain 13 (LBD13), which is expressed in emerged lateral roots and encodes a transcriptional activator, plays an important role in lateral root formation in Arabidopsis. Lateral roots (LRs) are major determinants of root system architecture, contributing to the survival strategies of plants. Members of the LBD gene family encode plant-specific transcription factors that play key roles in plant organ development. Several LBD genes, such as LBD14, 16, 18, 29, and 33, have been shown to play important roles in regulating LR development in Arabidopsis. In the present study, we show that LBD13 is expressed in emerged LRs and LR meristems of elongated LRs and regulates LR formation in Arabidopsis. Transient gene expression assays with Arabidopsis protoplasts showed that LBD13 is localized to the nucleus and harbors transcription-activating potential. Knock-down of LBD13 expression by RNA interference resulted in reduced LR formation, whereas overexpression of LBD13 enhanced LR formation in transgenic Arabidopsis. Analysis of β-glucuronidase (GUS) expression under the control of the LBD13 promoter showed that GUS staining was detected in LRs emerged from the primary root, but not in LR primordia. Moreover, both the distribution of LR primordium number and developmental kinetics of LR primordia were not affected either by knock-down or by overexpression of LBD13. Taken together, these results suggest that LBD13 is a nuclear-localized transcriptional activator and controls LR formation during or after LR emergence.

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantGenes, PlantNuclear ProteinsPlant RootsPlants, Genetically ModifiedReverse Transcriptase Polymerase Chain ReactionTranscription FactorsArabidopsis ProteinsLBD13 protein, ArabidopsisNuclear ProteinsTranscription FactorsArabidopsis thalianaLateral organ boundaries domainLateral rootLBD14ProtoplastsRNAiTranscription factor

Identifiers

PMID30627888
OpenAlexW2908538638

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.