Evidence map›Paper›PMID 30626918›Full record

ArticleScientific reports2019

Dominance of vaccine serotypes in pediatric invasive pneumococcal infections in Portugal (2012-2015).

Catarina Silva-Costa, Maria J Brito, Sandra I Aguiar, Joana P Lopes, Mário Ramirez, José Melo-Cristino, Portuguese Group for the Study of Streptococcal Infections, Portuguese Study Group of Invasive Pneumococcal Disease of the Pediatric Infectious Disease Society

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 40 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 20 institutions in 2 countries.

Catarina Silva-CostaInstituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Lisboa, Portugal.
Maria J BritoCentro Hospitalar de Lisboa Central, Lisboa, Portugal.
Sandra I AguiarInstituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Lisboa, Portugal.ORCID http://orcid.org/0000-0002-3041-383X
Joana P LopesInstituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Lisboa, Portugal.
Mário RamirezInstituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Lisboa, Portugal. ramirez@fm.ul.pt.ORCID http://orcid.org/0000-0002-4084-6233
José Melo-CristinoInstituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Lisboa, Portugal.
Portuguese Group for the Study of Streptococcal Infections
Portuguese Study Group of Invasive Pneumococcal Disease of the Pediatric Infectious Disease Society
Hospitais da Universidade de Coimbra · PTUnidade Local de Saúde de São José · PTUnidade Local de Saúde de Entre Douro e Vouga · PTUniversity of Lisbon · PTAlgarve Biomedical Center · PTCentro Hospitalar de Lisboa Ocidental · PTCentro Hospitalar do Porto · PTCentro Hospitalar Lisboa Norte · PTHospital Pedro Hispano · PTCentro Hospitalar de Vila Nova de Gaia · PTHospital de Santo António · PTHospital de São João · PTUnidade Local de Saúde de Trás-os-Montes e Alto Douro · PTHospital Braga · PTHospital Center of Cova da Beira · PTHospital do Espírito Santo · PTHospital Prof. Dr. Fernando Fonseca · PTHospital São Teotónio · PTCentro Hospitalar do Tâmega e Sousa · PTCentro Tecnológico das Indústrias Têxtil e do Vestuário de Portugal · PT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We evaluated the impact of continued 13-valent pneumococcal conjugate vaccine (PCV13) use in the private market (uptake of 61%) in pediatric invasive pneumococcal disease (pIPD) in Portugal (2012-2015). The most frequently detected serotypes were: 3 (n = 32, 13.8%), 14 (n = 23, 9.9%), 1 (n = 23, 9.9%), 7F (n = 15, 6.4%), 19A (n = 13, 5.6%), 6B and 15B/C (both n = 12, 5.2%), and 24F, 10A and 12B (all with n = 10, 4.3%). Taken together, non-PCV13 serotypes were responsible for 42.2% of pIPD with a known serotype. The use of PCR to detect and serotype pneumococci in both pleural and cerebrospinal fluid samples contributed to 18.1% (n = 47) of all pIPD. Serotype 3 was mostly detected by PCR (n = 21/32, 65.6%) and resulted from a relevant number of vaccine failures. The incidence of pIPD varied in the different age groups but without a clear trend. There were no obvious declines of the incidence of pIPD due to serotypes included in any of the PCVs, and PCV13 serotypes still accounted for the majority of pIPD (57.8%). Our study indicates that a higher vaccination uptake may be necessary to realize the full benefits of PCVs, even after 15 years of moderate use, and highlights the importance of using molecular methods in pIPD surveillance, since these can lead to substantially increased case ascertainment and identification of particular serotypes as causes of pIPD.

Indexed as

AdolescentChildChild, PreschoolHumansInfantInfant, NewbornPneumococcal InfectionsPneumococcal VaccinesPortugalSerogroupSerotypingStreptococcus pneumoniaeVaccinationVaccines, Conjugate13-valent pneumococcal vaccinePneumococcal VaccinesVaccines, Conjugate

Identifiers

PMID30626918
PMCPMC6327022
OpenAlexW2908611715

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.