Evidence map›Paper›PMID 30626867›Full record

ArticleNature communications2019

A tumor-specific endogenous repetitive element is induced by herpesviruses.

Maciej T Nogalski, Alexander Solovyov, Anupriya S Kulkarni, Niyati Desai, Adam Oberstein, Arnold J Levine, David T Ting, Thomas Shenk, Benjamin D Greenbaum

Abstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Modeling the Copy Number of HSATII Repeats in Human Pericentromere.International journal of molecular sciences · 2025
    Article
  7. Article
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  15. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Maciej T NogalskiDepartment of Molecular Biology, Princeton University, Princeton, NJ, 08544, USA.
Alexander SolovyovDepartment of Medicine, Hematology and Medical Oncology, Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Anupriya S KulkarniMassachusetts General Hospital Cancer Center, Harvard Medical School, Charlestown, MA, 02129, USA.
Niyati DesaiMassachusetts General Hospital Cancer Center, Harvard Medical School, Charlestown, MA, 02129, USA.
Adam ObersteinDepartment of Molecular Biology, Princeton University, Princeton, NJ, 08544, USA.
Arnold J LevineThe Simons Center for Systems Biology, School of Natural Sciences, Institute for Advanced Study, Princeton, NJ, 08540, USA.
David T TingMassachusetts General Hospital Cancer Center, Harvard Medical School, Charlestown, MA, 02129, USA.
Thomas ShenkDepartment of Molecular Biology, Princeton University, Princeton, NJ, 08544, USA. shenk@princeton.edu.
Benjamin D GreenbaumDepartment of Medicine, Hematology and Medical Oncology, Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA. benjamin.greenbaum@mssm.edu.

Funding

THE TISCH CANCER INSTITUTE - CANCER CENTER SUPPORT GRANTP30CA196521 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Deanna L Benson · 2015 to 2026
$35.4M
Modulating anti-HIV immunity by plasmacytoid dendritic cellsR01AI081848 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BHARDWAJ, NINA · 2010 to 2021
$4.5M
Understanding the Relationship of Repeat Expression and MetastasisR01CA240924 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI GREENBAUM, BENJAMIN, TING, DAVID TSAI · 2019 to 2023
$3.3M
Human cytomegalovirus-induced alterations to cell-surface adhesion proteinsR01AI112951 · NIAID · PRINCETON UNIVERSITY · PI SHENK, THOMAS E · 2015 to 2019
$1.8M
Human cytomegalovirus-induced alterations to cell-surface adhesion proteinsR56AI112951 · NIAID · PRINCETON UNIVERSITY · PI SHENK, THOMAS E · 2014 to 2014
$399k
NCI NIH HHS P30 CA196521NCI NIH HHS R01 CA240924NIAID NIH HHS R01 AI081848NIAID NIH HHS R01 AI112951NIAID NIH HHS R56 AI112951NIH HHS 1P30CA196521-01NIH HHS 7R01AI081848-04NIH HHS AI112951
6 · The paper itself

Abstract

Tandem satellite repeats account for 3% of the human genome. One of them, Human Satellite II (HSATII), is highly expressed in several epithelial cancers and cancer cell lines. Here we report an acute induction of HSATII RNA in human cells infected with two herpes viruses. We show that human cytomegalovirus (HCMV) IE1 and IE2 proteins cooperate to induce HSATII RNA affecting several aspects of the HCMV replication cycle, viral titers and infected-cell processes. HSATII RNA expression in tissue from two chronic HCMV colitis patients correlates with the strength of CMV antigen staining. Thus, endogenous HSATII RNA synthesis after herpesvirus infections appears to have functionally important consequences for viral replication and may provide a novel insight into viral pathogenesis. The HSATII induction seen in both infected and cancer cells suggests possible convergence upon common HSATII-based regulatory mechanisms in these seemingly disparate diseases.

Indexed as

Cell LineCell MovementFibroblastsGene Expression RegulationHerpesviridaeHuman GeneticsHumansIn Situ HybridizationInterspersed Repetitive SequencesRNAUp-RegulationRNA

Identifiers

PMID30626867
PMCPMC6327058

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.