Evidence map›Paper›PMID 30626865›Full record

ArticleNature communications2019

Single-cell microRNA-mRNA co-sequencing reveals non-genetic heterogeneity and mechanisms of microRNA regulation.

Nayi Wang, Ji Zheng, Zhuo Chen, Yang Liu, Burak Dura, Minsuk Kwak, Juliana Xavier-Ferrucio, Yi-Chien Lu, Miaomiao Zhang, Christine Roden and 5 more

Abstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 110 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
110citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

110 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
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  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. MicroRNAs and Their Profiling via Single-Cell Sequencing Technologies.Methods in molecular biology (Clifton, N.J.) · 2026
    Review
  13. Micro RNA Sequencing in Circulating Tumor Cells.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article

50 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Nayi WangDepartment of Biomedical Engineering, Yale University, New Haven, CT, 06520, USA.
Ji ZhengDepartment of Genetics, Yale University School of Medicine, New Haven, CT, 06510, USA.
Zhuo ChenDepartment of Biomedical Engineering, Yale University, New Haven, CT, 06520, USA.
Yang LiuDepartment of Genetics, Yale University School of Medicine, New Haven, CT, 06510, USA.
Burak DuraDepartment of Biomedical Engineering, Yale University, New Haven, CT, 06520, USA.
Minsuk KwakDepartment of Biomedical Engineering, Yale University, New Haven, CT, 06520, USA.
Juliana Xavier-FerrucioYale Stem Cell Center, Yale Cancer Center, New Haven, CT, 06520, USA.
Yi-Chien LuYale Stem Cell Center, Yale Cancer Center, New Haven, CT, 06520, USA.
Miaomiao ZhangDepartment of Genetics, Yale University School of Medicine, New Haven, CT, 06510, USA.
Christine RodenDepartment of Genetics, Yale University School of Medicine, New Haven, CT, 06510, USA.
Jijun ChengDepartment of Genetics, Yale University School of Medicine, New Haven, CT, 06510, USA.
Diane S KrauseYale Stem Cell Center, Yale Cancer Center, New Haven, CT, 06520, USA.
Ye DingWadworth Center, New York State Department of Health, Albany, NY, 12208, USA.
Rong FanDepartment of Biomedical Engineering, Yale University, New Haven, CT, 06520, USA. rong.fan@yale.edu.ORCID http://orcid.org/0000-0001-7805-8059
Jun LuDepartment of Genetics, Yale University School of Medicine, New Haven, CT, 06510, USA. jun.lu@yale.edu.

Funding

Project 3: Single Cell Measures of Intratumor Diversity for Optimal Breast Cancer TherapyU54CA193461 · NCI · DANA-FARBER CANCER INST · PI SCADDEN, DAVID T · 2015 to 2020
$11.2M
Systems analysis of phenotypic switch in control of cancer invasionU54CA209992 · NCI · YALE UNIVERSITY · PI LEVCHENKO, ANDRE · 2016 to 2021
$10.1M
Yale Cooperative Hematology Specialized Core CenterU54DK106857 · NIDDK · YALE UNIVERSITY · PI JOHN HWA, Diane S Krause · 2015 to 2026
$9.7M
GENETICS AND GENOMICS OF HUMAN DISEASET32HD007149 · NICHD · YALE UNIVERSITY · PI James P Noonan · 1985 to 2026
$8.2M
IMMUNOHEMATOLOGY/TRANSFUSION MEDICINE RESEARCH TRAININGT32HL007974 · NHLBI · YALE UNIVERSITY · PI JEANNE E HENDRICKSON, Diane S Krause · 2001 to 2026
$8.1M
Quantitative Modeling of MicroRNA:Target Interactions in Cell Fate TransitionR01GM116855 · NIGMS · WADSWORTH CENTER · PI DING, YE, LU, JUN · 2016 to 2019
$2.2M
The role of microRNAs in leukemic initiation and maintenanceR01CA149109 · NCI · YALE UNIVERSITY · PI LU, JUN · 2011 to 2015
$1.7M
High Performance Computing Instrumentation for the Yale Center for Genome AnalysiS10OD018521 · OD · YALE UNIVERSITY · PI MANE, SHRIKANT M · 2015 to 2015
$890k
High-throughput, Multiplexed Detection of miRNA Biomarkers in Single Cancer CellsR21CA177393 · NCI · YALE UNIVERSITY · PI DOYLE, PATRICK S, FAN, RONG · 2013 to 2015
$691k
NCI NIH HHS R01 CA149109NCI NIH HHS R21 CA177393NCI NIH HHS U54 CA193461NCI NIH HHS U54 CA209992NHLBI NIH HHS T32 HL007974NICHD NIH HHS T32 HD007149NIDDK NIH HHS U54 DK106857NIGMS NIH HHS R01 GM116855NIH HHS R01CA149109NIH HHS R01GM116855NIH HHS R21CA177393NIH HHS S10 OD018521NIH HHS U54CA193461NIH HHS U54CA209992NIH HHS U54DK106857
6 · The paper itself

Abstract

Measuring multiple omics profiles from the same single cell opens up the opportunity to decode molecular regulation that underlies intercellular heterogeneity in development and disease. Here, we present co-sequencing of microRNAs and mRNAs in the same single cell using a half-cell genomics approach. This method demonstrates good robustness (~95% success rate) and reproducibility (R

Indexed as

Gene Expression RegulationHumansK562 CellsMCF-7 CellsMicroRNAsRNATranscriptomeMicroRNAsRNA

Identifiers

PMID30626865
PMCPMC6327095

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.