Evidence map›Paper›PMID 30626684›Full record

ArticleJournal of virology2019

Why Are CD8 T Cell Epitopes of Human Influenza A Virus Conserved?

Zheng-Rong Tiger Li, Veronika I Zarnitsyna, Anice C Lowen, Daniel Weissman, Katia Koelle, Jacob E Kohlmeier, Rustom Antia

Open access · hybridAbstract read
In one paragraph

Article in Journal of virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 32 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Post-vaccination T cell immunity to omicron.Frontiers in immunology · 2022
    Review
  13. Review
  14. Robust induction of TMolecular therapy. Methods & clinical development · 2021
    Article
  15. Article
  16. Immunity to Influenza Infection in Humans.Cold Spring Harbor perspectives in medicine · 2021
    Review
  17. Article
  18. Article
  19. Article
  20. Harnessing Cross-Reactive CD8Viral immunology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Zheng-Rong Tiger LiDepartment of Biology, Emory University, Atlanta, Georgia, USA.ORCID 0000-0003-0524-279X
Veronika I ZarnitsynaDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, Georgia, USA veronika.i.zarnitsyna@emory.edu rantia@emory.edu.ORCID 0000-0003-3096-3695
Anice C LowenDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, Georgia, USA.ORCID 0000-0002-9829-112X
Daniel WeissmanDepartment of Biology, Emory University, Atlanta, Georgia, USA.
Katia KoelleDepartment of Biology, Emory University, Atlanta, Georgia, USA.
Jacob E KohlmeierDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, Georgia, USA.
Rustom AntiaDepartment of Biology, Emory University, Atlanta, Georgia, USA veronika.i.zarnitsyna@emory.edu rantia@emory.edu.
Emory University · US

Funding

Understanding Transmission with Integrated Genetic and Epidemiologic InferenceU54GM111274 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HALLORAN, M ELIZABETH · 2014 to 2018
$12.5M
Modeling the dynamics and evolution of immune responses to influenza virusesU19AI117891 · NIAID · EMORY UNIVERSITY · PI ANTIA, RUSTOM NOSHIR · 2015 to 2019
$8.4M
Multiscale modeling of influenza vaccination strategies for optimal T cell immunityU01HL139483 · NHLBI · EMORY UNIVERSITY · PI KOHLMEIER, JACOB E, ZARNITSYNA, VERONIKA I · 2018 to 2022
$3.5M
QUANTIFYING THE BALANCE BETWEEN VACCINE-INDUCED T CELL PROTECTION AND PATHOLOGYR01AI110720 · NIAID · EMORY UNIVERSITY · PI ANTIA, RUSTOM NOSHIR · 2014 to 2018
$2.0M
NHLBI NIH HHS U01 HL139483NIAID NIH HHS R01 AI110720NIAID NIH HHS U19 AI117891NIGMS NIH HHS U54 GM111274
6 · The paper itself

Abstract

The high degree of conservation of CD8 T cell epitopes of influenza A virus (IAV) may allow for the development of T cell-inducing vaccines that provide protection across different strains and subtypes. This conservation is not fully explained by functional constraint, since an additional mutation(s) can compensate for the replicative fitness loss of IAV escape variants. Here, we propose three additional mechanisms that contribute to the conservation of CD8 T cell epitopes of IAV. First, influenza-specific CD8 T cells may protect predominantly against severe pathology rather than infection and may have only a modest effect on transmission. Second, polymorphism of the human major histocompatibility complex class I (MHC-I) gene restricts the advantage of an escape variant to only a small fraction of the human population who carry the relevant MHC-I alleles. Finally, infection with CD8 T cell escape variants may result in a compensatory increase in the responses to other epitopes of IAV. We use a combination of population genetics and epidemiological models to examine how the interplay between these mechanisms affects the rate of invasion of IAV escape variants. We conclude that for a wide range of biologically reasonable parameters, the invasion of an escape variant virus will be slow, with a timescale of a decade or more. The results suggest T cell-inducing vaccines do not engender the rapid evolution of IAV. Finally, we identify key parameters whose measurement will allow for more accurate quantification of the long-term effectiveness and impact of universal T cell-inducing influenza vaccines.

Indexed as

CD8-Positive T-LymphocytesEpitopes, T-LymphocyteHistocompatibility Antigens Class IHumansInfluenza A virusInfluenza, HumanInfluenza VaccinesPandemicsEpitopes, T-LymphocyteHistocompatibility Antigens Class IInfluenza Vaccinesevolutionary biologyinfluenza A virusinfluenza vaccinesmathematical modelingT cells

Identifiers

PMID30626684
PMCPMC6401462
OpenAlexW2952040370

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.