Evidence map›Paper›PMID 30625322›Full record

ArticleCell reports2019

Single-Cell Analysis of Regional Differences in Adult V-SVZ Neural Stem Cell Lineages.

Dogukan Mizrak, Hanna Mendes Levitin, Ana C Delgado, Valerie Crotet, Jinzhou Yuan, Zayna Chaker, Violeta Silva-Vargas, Peter A Sims, Fiona Doetsch

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 145 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
145citing papers in PubMed, 1 pooled it
12.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

145 citing papers in PubMed, 1 synthesis or guideline pooled it, 254 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Inherited Susceptibility to Urinary Tract Infections from Kidney Papilla to Bladder.medRxiv : the preprint server for health sciences · 2026
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  9. GFAPProceedings of the National Academy of Sciences of the United States of America · 2026
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85 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Dogukan MizrakDepartment of Systems Biology, Columbia University Medical Center, New York, NY 10032, USA; Department of Pathology and Cell Biology, Columbia University Medical Center, New York, NY 10032, USA.
Hanna Mendes LevitinDepartment of Systems Biology, Columbia University Medical Center, New York, NY 10032, USA.
Ana C DelgadoBiozentrum, University of Basel, 4056 Basel, Switzerland.
Valerie CrotetBiozentrum, University of Basel, 4056 Basel, Switzerland.
Jinzhou YuanDepartment of Systems Biology, Columbia University Medical Center, New York, NY 10032, USA.
Zayna ChakerBiozentrum, University of Basel, 4056 Basel, Switzerland.
Violeta Silva-VargasBiozentrum, University of Basel, 4056 Basel, Switzerland.
Peter A SimsDepartment of Systems Biology, Columbia University Medical Center, New York, NY 10032, USA; Sulzberger Columbia Genome Center, Columbia University Medical Center, New York, NY 10032, USA; Department of Biochemistry & Molecular Biophysics, Columbia University Medical Center, New York, NY 10032, USA. Electronic address: pas2182@cumc.columbia.edu.
Fiona DoetschBiozentrum, University of Basel, 4056 Basel, Switzerland. Electronic address: fiona.doetsch@unibas.ch.
University of Basel · CHColumbia University Irving Medical Center · US

Funding

TRAINING IN CELLULAR, MOLECULAR AND BIOPHYSICAL STUDIEST32GM008224 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI LIEM, RONALD K. · 1987 to 2021
$9.9M
Prospective Purification of Adult Stem Cell AstrocytesR01NS074039 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SHELANSKI, MICHAEL L · 2011 to 2015
$1.7M
Large-Scale Integration of Single Cell RNA-Seq and High-Content Imaging for Analyzing Drug Response in CancerR33CA202827 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SIMS, PETER ALAN · 2016 to 2018
$948k
A Microfluidic System for Image-Guided RNA-Seq of Single Cells in GlioblastomaK01EB016071 · NIBIB · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SIMS, PETER ALAN · 2012 to 2016
$863k
Single-cell dissection of neural stem cell heterogeneity in vivoF32NS090736 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MIZRAK, DOGUKAN · 2014 to 2016
$169k
NCI NIH HHS R33 CA202827NIBIB NIH HHS K01 EB016071NIGMS NIH HHS T32 GM008224NINDS NIH HHS F32 NS090736NINDS NIH HHS R01 NS074039
6 · The paper itself

Abstract

The ventricular-subventricular zone (V-SVZ) harbors adult neural stem cells. V-SVZ neural stem cells exhibit features of astrocytes, have a regional identity, and depending on their location in the lateral or septal wall of the lateral ventricle, generate different types of neuronal and glial progeny. We performed large-scale single-cell RNA sequencing to provide a molecular atlas of cells from the lateral and septal adult V-SVZ of male and female mice. This revealed regional and sex differences among adult V-SVZ cells. We uncovered lineage potency bias at the single-cell level among lateral and septal wall astrocytes toward neurogenesis and oligodendrogenesis, respectively. Finally, we identified transcription factor co-expression modules marking key temporal steps in neurogenic and oligodendrocyte lineage progression. Our data suggest functionally important spatial diversity in neurogenesis and oligodendrogenesis in the adult brain and reveal molecular correlates of adult NSC dormancy and lineage specialization.

Indexed as

Cell LineageTranscriptomeAnimalsAstrocytesFemaleLateral VentriclesMaleMiceMice, Inbred C57BLNeural Stem CellsNeurogenesisNeuronsOrgan SpecificitySingle-Cell Analysisadult neural stem celladult neurogenesisfemalegliogenesismaleregional heterogeneitysingle cellstem cell nicheventricular-subventricular zone

Identifiers

PMID30625322
PMCPMC6368857
OpenAlexW2909032196

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.