Evidence map›Paper›PMID 30625164›Full record

ArticlePloS one2019

A single introduction of Yersinia pestis to Brazil during the 3rd plague pandemic.

Amy J Vogler, Jason W Sahl, Nilma C Leal, Marise Sobreira, Charles H D Williamson, Molly C Bollig, Dawn N Birdsell, Andrew Rivera, Brian Thompson, Roxanne Nottingham and 4 more

Abstract readHistorical Article
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Genomic Analysis ofPathogens (Basel, Switzerland) · 2023
    Article
  6. Review
  7. Yersinia pestis: the Natural History of Plague.Clinical microbiology reviews · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Amy J VoglerThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.
Jason W SahlThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.
Nilma C LealInstitute Aggeu Magalhães, Recife, Pernambuco, Brazil.
Marise SobreiraInstitute Aggeu Magalhães, Recife, Pernambuco, Brazil.
Charles H D WilliamsonThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.
Molly C BolligThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.
Dawn N BirdsellThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.
Andrew RiveraThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.
Brian ThompsonThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.
Roxanne NottinghamThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.
Antonio M RezendeInstitute Aggeu Magalhães, Recife, Pernambuco, Brazil.
Paul KeimThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.
Alzira M P AlmeidaInstitute Aggeu Magalhães, Recife, Pernambuco, Brazil.
David M WagnerThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.ORCID 0000-0003-2684-6007

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Yersinia pestis was introduced to Brazil during the third plague pandemic and currently exists in several recognized foci. There is currently limited available phylogeographic data regarding Y. pestis in Brazil. We generated whole genome sequences for 411 Y. pestis strains from six Brazilian foci to investigate the phylogeography of Y. pestis in Brazil; these strains were isolated from 1966 to 1997. All 411 strains were assigned to a single monophyletic clade within the 1.ORI population, indicating a single Y. pestis introduction was responsible for the successful establishment of endemic foci in Brazil. There was a moderate level of genomic diversity but little population structure among the 411 Brazilian Y. pestis strains, consistent with a radial expansion wherein Y. pestis spread rapidly from the coast to the interior of Brazil and became ecologically established. Overall, there were no strong spatial or temporal patterns among the Brazilian strains. However, strains from the same focus tended to be more closely related and strains isolated from foci closer to the coast tended to fall in more basal positions in the whole genome phylogeny than strains from more interior foci. Overall, the patterns observed in Brazil are similar to other locations affected during the 3rd plague pandemic such as in North America and Madagascar.

Indexed as

BrazilDNA, BacterialGenetic VariationGenome, BacterialHistory, 19th CenturyHistory, 20th CenturyHumansPandemicsPhylogenyPhylogeographyPlaguePolymorphism, Single NucleotideSpatio-Temporal AnalysisYersinia pestisDNA, Bacterial

Identifiers

PMID30625164
PMCPMC6326411

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.