Evidence map›Paper›PMID 30624736›Full record

ArticleNucleic acids research2019

Crystal structure of the Redβ C-terminal domain in complex with λ Exonuclease reveals an unexpected homology with λ Orf and an interaction with Escherichia coli single stranded DNA binding protein.

Brian J Caldwell, Ekaterina Zakharova, Gabriel T Filsinger, Timothy M Wannier, Jordan P Hempfling, Lee Chun-Der, Dehua Pei, George M Church, Charles E Bell

Open access · greenAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
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  6. Article
  7. A diverse single-stranded DNA-annealing protein library enables efficient genome editing across bacterial phyla.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Monomers and short oligomers of human RAD52 promote single-strand annealing.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Proof of ssDNA degraded from dsDNA for ET recombination.Biochemistry and biophysics reports · 2024
    Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. RedβNature communications · 2022
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Recombineering and MAGE.Nature reviews. Methods primers · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Brian J CaldwellOhio State Biochemistry Program, The Ohio State University, 484 West 12th Avenue, Columbus, OH 43210, USA.
Ekaterina ZakharovaDepartment of Biological Chemistry and Pharmacology, The Ohio State University, 1060 Carmack Road, Columbus, OH 43210, USA.
Gabriel T FilsingerDepartment of Systems Biology, Harvard Medical School, Cambridge, MA 02138, USA.
Timothy M WannierDepartment of Genetics, Harvard Medical School, Cambridge, MA 02138, USA.
Jordan P HempflingOhio State Biochemistry Program, The Ohio State University, 484 West 12th Avenue, Columbus, OH 43210, USA.
Lee Chun-DerDepartment of Chemistry and Biochemistry, The Ohio State University, 484 West 12th Avenue, Columbus, OH 43210, USA.
Dehua PeiOhio State Biochemistry Program, The Ohio State University, 484 West 12th Avenue, Columbus, OH 43210, USA.
George M ChurchDepartment of Genetics, Harvard Medical School, Cambridge, MA 02138, USA.
Charles E BellOhio State Biochemistry Program, The Ohio State University, 484 West 12th Avenue, Columbus, OH 43210, USA.
The Ohio State University · USHarvard University · US

Funding

Development of Cell-Permeable Peptides and ProteinsR35GM122459 · NIGMS · OHIO STATE UNIVERSITY · PI Dehua Pei · 2017 to 2026
$5.1M
Molecular Biophysics predoctoral training at The Ohio State UniversityT32GM118291 · NIGMS · OHIO STATE UNIVERSITY · PI BUNDSCHUH, RALF A, KURET, JEFF · 2017 to 2021
$720k
NIGMS NIH HHS R35 GM122459NIGMS NIH HHS T32 GM118291
6 · The paper itself

Abstract

Bacteriophage λ encodes a DNA recombination system that includes a 5'-3' exonuclease (λ Exo) and a single strand annealing protein (Redβ). The two proteins form a complex that is thought to mediate loading of Redβ directly onto the single-stranded 3'-overhang generated by λ Exo. Here, we present a 2.3 Å crystal structure of the λ Exo trimer bound to three copies of the Redβ C-terminal domain (CTD). Mutation of residues at the hydrophobic core of the interface disrupts complex formation in vitro and impairs recombination in vivo. The Redβ CTD forms a three-helix bundle with unexpected structural homology to phage λ Orf, a protein that binds to E. coli single-stranded DNA binding protein (SSB) to function as a recombination mediator. Based on this relationship, we found that Redβ binds to full-length SSB, and to a peptide corresponding to its nine C-terminal residues, in an interaction that requires the CTD. These results suggest a dual role of the CTD, first in binding to λ Exo to facilitate loading of Redβ directly onto the initial single-stranded DNA (ssDNA) at a 3'-overhang, and second in binding to SSB to facilitate annealing of the overhang to SSB-coated ssDNA at the replication fork.

Indexed as

Amino Acid SequenceBacteriophage lambdaCrystallography, X-RayDNA-Binding ProteinsEscherichia coli ProteinsExodeoxyribonucleasesMutationProtein BindingProtein DomainsRecombination, GeneticViral ProteinsDNA-Binding ProteinsEscherichia coli ProteinsExodeoxyribonucleasesexo protein, Bacteriophage lambdaSSB protein, E coliViral Proteins

Identifiers

PMID30624736
PMCPMC6393309
OpenAlexW2908242457

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.