Evidence map›Paper›PMID 30624716›Full record

ArticleNucleic acids research2019

Nuclear processing of nascent transcripts determines synthesis of full-length proteins and antigenic peptides.

Rodrigo Prado Martins, Laurence Malbert-Colas, María José Lista, Chrysoula Daskalogianni, Sebastien Apcher, Marika Pla, Sarah Findakly, Marc Blondel, Robin Fåhraeus

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
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  4. Major histocompatibility class I antigenic peptides derived from translation of pre-mRNAs generate immune tolerance.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Beneficial autoimmunity improves cancer prognosis.Nature reviews. Clinical oncology · 2021
    Review
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  12. Article
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  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Contribution of proteasome-catalyzed peptideProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 4 countries.

Rodrigo Prado MartinsUniversité Paris 7, Inserm, UMR 1162, Paris, France.
Laurence Malbert-ColasUniversité Paris 7, Inserm, UMR 1162, Paris, France.
María José ListaUniversité de Brest, Inserm, EFS, UMR 1078, GGB, F-29200 Brest, France.
Chrysoula DaskalogianniUniversité Paris 7, Inserm, UMR 1162, Paris, France.
Sebastien ApcherInstitut Gustave Roussy, Université Paris Sud, UMR 1015, Villejuif, France.
Marika PlaUniversité Paris 7, IUH, Inserm, UMR-S-1131, Paris, France.
Sarah FindaklyUniversité Paris 7, Inserm, UMR 1162, Paris, France.
Marc BlondelUniversité de Brest, Inserm, EFS, UMR 1078, GGB, F-29200 Brest, France.
Robin FåhraeusUniversité Paris 7, Inserm, UMR 1162, Paris, France.
Inserm · FRUniversité Paris-Sud · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Peptides presented on major histocompatibility (MHC) class I molecules form an essential part of the immune system's capacity to detect virus-infected or transformed cells. Earlier works have shown that pioneer translation peptides (PTPs) for the MHC class I pathway are as efficiently produced from introns as from exons, or from mRNAs targeted for the nonsense-mediated decay pathway. The production of PTPs is a target for viral immune evasion but the underlying molecular mechanisms that govern this non-canonical translation are unknown. Here, we have used different approaches to show how events taking place on the nascent transcript control the synthesis of PTPs and full-length proteins. By controlling the subcellular interaction between the G-quadruplex structure (G4) of a gly-ala encoding mRNA and nucleolin (NCL) and by interfering with mRNA maturation using multiple approaches, we demonstrate that antigenic peptides derive from a nuclear non-canonical translation event that is independently regulated from the synthesis of full-length proteins. Moreover, we show that G4 are exploited to control mRNA localization and translation by distinguishable mechanisms that are targets for viral immune evasion.

Indexed as

AntigensCell NucleusG-QuadruplexesHistocompatibility Antigens Class IHumansImmune EvasionNonsense Mediated mRNA DecayPeptidesProtein BiosynthesisRNA, MessengerAntigensHistocompatibility Antigens Class IPeptidesRNA, Messenger

Identifiers

PMID30624716
PMCPMC6451098
OpenAlexW2911163550

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.