Evidence map›Paper›PMID 30622330›Full record

ArticleEuropean journal of human genetics : EJHG2019

Genetic architecture of laterality defects revealed by whole exome sequencing.

Alexander H Li, Neil A Hanchard, Mahshid Azamian, Lisa C A D'Alessandro, Zeynep Coban-Akdemir, Keila N Lopez, Nancy J Hall, Heather Dickerson, Annarita Nicosia, Susan Fernbach and 21 more

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 1 pooled it
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 1 synthesis or guideline pooled it, 84 citations in OpenAlex.

  1. Pooled it
  2. Article
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  5. Article
  6. Science advances · 2026
    Article
  7. Laterality and Completeness Patterns of Nonsyndromic Clefts in a Multiethnic Cohort.medRxiv : the preprint server for health sciences · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors at 5 institutions in 1 country.

Alexander H LiHuman Genetics Center, University of Texas Health Science Center, Houston, TX, USA.
Neil A HanchardDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Mahshid AzamianDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Lisa C A D'AlessandroTexas Children's Hospital, Houston, TX, USA.
Zeynep Coban-AkdemirDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Keila N LopezTexas Children's Hospital, Houston, TX, USA.
Nancy J HallDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Heather DickersonTexas Children's Hospital, Houston, TX, USA.
Annarita NicosiaDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Susan FernbachDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Philip M BooneDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Tomaz GambinDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Ender KaracaDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Shen GuDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Bo YuanDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Shalini N JhangianiHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.
HarshaVardhan DoddapaneniHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.
Jianhong HuHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.
Huyen DinhHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.
Joy JayaseelanHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.
Donna MuznyHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.
Seema LalaniDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Jeffrey TowbinPediatric Cardiology, University of Tennessee Health Science Center, Memphis, TN, USA.
Daniel PennyTexas Children's Hospital, Houston, TX, USA.
Charles FraserTexas Children's Hospital, Houston, TX, USA.
James MartinDepartment of Molecular Physiology and Biophysics, Baylor College of Medicine, Houston, TX, USA.
James R LupskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Richard A GibbsDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Eric BoerwinkleHuman Genetics Center, University of Texas Health Science Center, Houston, TX, USA.
Stephanie M WareDepartments of Pediatrics and Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, IN, USA.
John W BelmontDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA. jbelmont@bcm.tmc.edu.
Baylor College of Medicine · USTexas Children's Hospital · USIndiana University School of MedicineThe University of Texas Health Science Center at Houston · USUniversity of Tennessee Health Science Center · US

Funding

Transcriptional regulation of cardiac morphogenesisP01HL134599 · NHLBI · INDIANA UNIVERSITY INDIANAPOLIS · PI Anthony B. Firulli · 2017 to 2026
$25.7M
Baylor-Johns Hopkins Center for Mendelian GeneticsUM1HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2016 to 2020
$14.5M
Steps towards a paternal gene activation therapy for Angelman syndromeU54HD083092 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI NELSON, DAVID LOREN, NEUL, JEFFREY L · 2014 to 2019
$7.8M
GENETIC STUDIES OF COMMON CONGENITAL HEART DEFECTSR01HD039056 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI BELMONT, JOHN WILLIAM · 2000 to 2004
$4.5M
Genome Wide Association Study for Hypoplastic Left Heart and Related DefectsR01HL090506 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI BELMONT, JOHN WILLIAM · 2008 to 2011
$3.0M
Novel Genomic Disorders Causing Cardiovascular MalformationsR01HL091771 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI BELMONT, JOHN WILLIAM · 2008 to 2011
$1.5M
Building Mobile Technologies to Reduce Health Disparities in Congenital Heart DiseaseK23HL127164 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI LOPEZ, KEILA NATILDE · 2016 to 2021
$856k
Individual genomic analyses to discover the molecular basis and mechanisms contributing to adult-onset diseaseK08HG008986 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI POSEY, JENNIFER ELLEN · 2017 to 2021
$831k
NHGRI NIH HHS K08 HG008986NHGRI NIH HHS UM1 HG006542NHLBI NIH HHS K23 HL127164NHLBI NIH HHS P01 HL134599NHLBI NIH HHS R01 HL090506NHLBI NIH HHS R01 HL091771NICHD NIH HHS R01 HD039056NICHD NIH HHS U54 HD083092
6 · The paper itself

Abstract

Aberrant left-right patterning in the developing human embryo can lead to a broad spectrum of congenital malformations. The causes of most laterality defects are not known, with variants in established genes accounting for <20% of cases. We sought to characterize the genetic spectrum of these conditions by performing whole-exome sequencing of 323 unrelated laterality cases. We investigated the role of rare, predicted-damaging variation in 1726 putative laterality candidate genes derived from model organisms, pathway analyses, and human phenotypes. We also evaluated the contribution of homo/hemizygous exon deletions and gene-based burden of rare variation. A total of 28 candidate variants (26 rare predicted-damaging variants and 2 hemizygous deletions) were identified, including variants in genes known to cause heterotaxy and primary ciliary dyskinesia (ACVR2B, NODAL, ZIC3, DNAI1, DNAH5, HYDIN, MMP21), and genes without a human phenotype association, but with prior evidence for a role in embryonic laterality or cardiac development. Sanger validation of the latter variants in probands and their parents revealed no de novo variants, but apparent transmitted heterozygous (ROCK2, ISL1, SMAD2), and hemizygous (RAI2, RIPPLY1) variant patterns. Collectively, these variants account for 7.1% of our study subjects. We also observe evidence for an excess burden of rare, predicted loss-of-function variation in PXDNL and BMS1- two genes relevant to the broader laterality phenotype. These findings highlight potential new genes in the development of laterality defects, and suggest extensive locus heterogeneity and complex genetic models in this class of birth defects.

Indexed as

AnimalsBody PatterningEmbryonic DevelopmentExome SequencingFemaleGenetic Association StudiesGenome, HumanGenomicsGTP PhosphohydrolasesHeart Defects, CongenitalHeterotaxy SyndromeHumansMalePeroxidasesPeroxidasinZebrafishbms1 protein, zebrafishGTP PhosphohydrolasesPeroxidasesPeroxidasinPXDNL protein, humanZebrafish Proteins

Identifiers

PMID30622330
PMCPMC6460585
OpenAlexW2911148348

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.