Evidence map›Paper›PMID 30622309›Full record

ArticleInternational journal of obesity (2005)2019

Differential SLC6A4 methylation: a predictive epigenetic marker of adiposity from birth to adulthood.

Karen A Lillycrop, Emma S Garratt, Philip Titcombe, Phillip E Melton, Robert J S Murray, Sheila J Barton, Rebecca Clarke-Harris, Paula M Costello, Joanna D Holbrook, James C Hopkins and 14 more

Open access · hybridAbstract read
In one paragraph

Article in International journal of obesity (2005), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 41 citations in OpenAlex.

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  15. Gestational Diabetes Mellitus and Developmental Programming.Annals of nutrition & metabolism · 2020
    Review
  16. Review
  17. Family Factors Associated with Selected Childhood Nutrition Aspects in Central Poland.International journal of environmental research and public health · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 6 institutions in 3 countries.

Karen A LillycropCentre for Biological Sciences, Faculty of Natural and Environmental Sciences, University of Southampton, Southampton, UK. kal@soton.ac.uk.
Emma S GarrattNIHR Southampton Biomedical Research Centre, University of Southampton and University Hospital Southampton NHS Foundation Trust, Southampton, UK.
Philip TitcombeMRC Lifecourse Epidemiology Unit, University of Southampton, Southampton, UK.
Phillip E MeltonCentre for Genetics of Health and Disease, University of Western Australia, Perth, Australia.ORCID http://orcid.org/0000-0003-4026-2964
Robert J S MurrayAcademic Unit of Human Development and Health, Faculty of Medicine, University of Southampton, Southampton, UK.
Sheila J BartonMRC Lifecourse Epidemiology Unit, University of Southampton, Southampton, UK.
Rebecca Clarke-HarrisAcademic Unit of Human Development and Health, Faculty of Medicine, University of Southampton, Southampton, UK.
Paula M CostelloAcademic Unit of Human Development and Health, Faculty of Medicine, University of Southampton, Southampton, UK.
Joanna D HolbrookNIHR Southampton Biomedical Research Centre, University of Southampton and University Hospital Southampton NHS Foundation Trust, Southampton, UK.ORCID http://orcid.org/0000-0003-1791-6894
James C HopkinsAcademic Unit of Human Development and Health, Faculty of Medicine, University of Southampton, Southampton, UK.
Caroline E ChildsAcademic Unit of Human Development and Health, Faculty of Medicine, University of Southampton, Southampton, UK.
Carolina Paras-ChavezAcademic Unit of Human Development and Health, Faculty of Medicine, University of Southampton, Southampton, UK.
Philip C CalderNIHR Southampton Biomedical Research Centre, University of Southampton and University Hospital Southampton NHS Foundation Trust, Southampton, UK.
Trevor A MoriSchool of Medicine, University of Western Australia, Perth, WA, Australia.
Lawrie BeilinSchool of Medicine, University of Western Australia, Perth, WA, Australia.
Graham C BurdgeAcademic Unit of Human Development and Health, Faculty of Medicine, University of Southampton, Southampton, UK.
Peter D GluckmanLiggins Institute, University of Auckland, Auckland, New Zealand.
Hazel M InskipNIHR Southampton Biomedical Research Centre, University of Southampton and University Hospital Southampton NHS Foundation Trust, Southampton, UK.ORCID http://orcid.org/0000-0001-8897-1749
Nicholas C HarveyNIHR Southampton Biomedical Research Centre, University of Southampton and University Hospital Southampton NHS Foundation Trust, Southampton, UK.
Mark A HansonAcademic Unit of Human Development and Health, Faculty of Medicine, University of Southampton, Southampton, UK.
Rae-Chi HuangTelethon Kids Institute, University of Western Australia, Perth, WA, Australia.
Cyrus CooperNIHR Southampton Biomedical Research Centre, University of Southampton and University Hospital Southampton NHS Foundation Trust, Southampton, UK.
EpiGen Consortium
Keith M GodfreyNIHR Southampton Biomedical Research Centre, University of Southampton and University Hospital Southampton NHS Foundation Trust, Southampton, UK.ORCID http://orcid.org/0000-0002-4643-0618
University Hospital Southampton NHS Foundation Trust · GBUniversity of Southampton · GBThe University of Western Australia · AUMRC Lifecourse Epidemiology Unit · GBThe Kids Research Institute Australia · AUUniversity of Auckland · NZ

Funding

Interdisciplinary Research Network on Early Adversity & Later Life ReversibilityU24AG047867 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GODFREY, KEITH, MCEWEN, BRUCE S. · 2014 to 2018
$954k
Biotechnology and Biological Sciences Research Council ES/M00919X/1British Heart Foundation PG/14/33/30827British Heart Foundation RG/07/009British Heart Foundation RG/07/009/23120British Heart Foundation RG/15/17/3174British Heart Foundation RG/15/17/31749Department of Health 10/33/04Department of Health NF-SI-0515-10042Medical Research Council G0400491Medical Research Council G0601019Medical Research Council MC_ST_U12055Medical Research Council MC_U147574222Medical Research Council MC_U147574226Medical Research Council MC_U147585819Medical Research Council MC_U147585824Medical Research Council MC_U147585827Medical Research Council MC_UP_A620_1014Medical Research Council MC_UP_A620_1015Medical Research Council MC_UP_A620_1017Medical Research Council MC_UU_12011/1Medical Research Council MC_UU_12011/2Medical Research Council MC_UU_12011/4Medical Research Council MR/J000094/1NIA NIH HHS U24 AG047867Versus Arthritis 17702Versus Arthritis 21231
6 · The paper itself

Abstract

backgroundThe early life environment may influence susceptibility to obesity and metabolic disease in later life through epigenetic processes. SLC6A4 is an important mediator of serotonin bioavailability, and has a key role in energy balance. We tested the hypothesis that methylation of the SLC6A4 gene predicts adiposity across the life course.

methodsDNA methylation at 5 CpGs within the SLC6A4 gene identified from a previous methyl binding domain array was measured by pyrosequencing. We measured DNA methylation in umbilical cord (UC) from children in the Southampton Women's Survey cohort (n = 680), in peripheral blood from adolescents in the Western Australian Pregnancy Cohort Study (n = 812), and in adipose tissue from lean and obese adults from the UK BIOCLAIMS cohort (n = 81). Real-time PCR was performed to assess whether there were corresponding alterations in gene expression in the adipose tissue.

resultsLower UC methylation of CpG5 was associated with higher total fat mass at 4 years (p = 0.031), total fat mass at 6-7 years (p = 0.0001) and % fat mass at 6-7 years (p = 0.004). Lower UC methylation of CpG5 was also associated with higher triceps skinfold thickness at birth (p = 0.013), 6 months (p = 0.038), 12 months (p = 0.062), 2 years (p = 0.0003), 3 years (p = 0.00004) and 6-7 years (p = 0.013). Higher maternal pregnancy weight gain (p = 0.046) and lower parity (p = 0.029) were both associated with lower SLC6A4 CpG5 methylation. In adolescents, lower methylation of CpG5 in peripheral blood was associated with greater concurrent measures of adiposity including BMI (p ≤ 0.001), waist circumference (p = 0.011), subcutaneous fat (p ≤ 0.001) and subscapular, abdominal and suprailiac skinfold thicknesses (p = 0.002, p = 0.008, p = 0.004, respectively). In adipose tissue, methylation of both SLC6A4 CpG5 (p = 0.019) and expression of SLC6A4 (p = 0.008) was lower in obese compared with lean adults.

conclusionsThese data suggest that altered methylation of CpG loci within SLC6A4 may provide a robust marker of adiposity across the life course.

Indexed as

Absorptiometry, PhotonAdiposityAdolescentAdultAustraliaBiomarkersChildChild, PreschoolCohort StudiesDNA MethylationEpigenesis, GeneticFemaleGene-Environment InteractionGenetic Predisposition to DiseaseHumansInfant, NewbornBiomarkersSerotonin Plasma Membrane Transport ProteinsSLC6A4 protein, human

Identifiers

PMID30622309
PMCPMC6522375
OpenAlexW2911074708

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.