Evidence map›Paper›PMID 30621359›Full record

ArticleJournal of clinical medicine2019

Efficacy of Integrating a Novel 16-Gene Biomarker Panel and Intelligence Classifiers for Differential Diagnosis of Rheumatoid Arthritis and Osteoarthritis.

Nguyen Phuoc Long, Seongoh Park, Nguyen Hoang Anh, Jung Eun Min, Sang Jun Yoon, Hyung Min Kim, Tran Diem Nghi, Dong Kyu Lim, Jeong Hill Park, Johan Lim and 1 more

Open access · goldAbstract read
In one paragraph

Article in Journal of clinical medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 43 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Nguyen Phuoc LongCollege of Pharmacy and Research Institute of Pharmaceutical Sciences, Seoul National University, Seoul 08826, Korea. phuoclong@snu.ac.kr.ORCID 0000-0002-4678-0546
Seongoh ParkDepartment of Statistics, Seoul National University, Seoul 08826, Korea. inmybrain@snu.ac.kr.
Nguyen Hoang AnhCollege of Pharmacy and Research Institute of Pharmaceutical Sciences, Seoul National University, Seoul 08826, Korea. 2018-23140@snu.ac.kr.
Jung Eun MinCollege of Pharmacy and Research Institute of Pharmaceutical Sciences, Seoul National University, Seoul 08826, Korea. mje0107@snu.ac.kr.
Sang Jun YoonCollege of Pharmacy and Research Institute of Pharmaceutical Sciences, Seoul National University, Seoul 08826, Korea. supercanboy@snu.ac.kr.
Hyung Min KimCollege of Pharmacy and Research Institute of Pharmaceutical Sciences, Seoul National University, Seoul 08826, Korea. snuhmkim04@snu.ac.kr.
Tran Diem NghiSchool of Medicine, Vietnam National University, Ho Chi Minh 700000, Vietnam. trandiemnghi@gmail.com.
Dong Kyu LimCollege of Pharmacy and Research Institute of Pharmaceutical Sciences, Seoul National University, Seoul 08826, Korea. ddongq1989@snu.ac.kr.
Jeong Hill ParkCollege of Pharmacy and Research Institute of Pharmaceutical Sciences, Seoul National University, Seoul 08826, Korea. hillpark@snu.ac.kr.
Johan LimDepartment of Statistics, Seoul National University, Seoul 08826, Korea. johanlim@snu.ac.kr.
Sung Won KwonCollege of Pharmacy and Research Institute of Pharmaceutical Sciences, Seoul National University, Seoul 08826, Korea. swkwon@snu.ac.kr.ORCID 0000-0001-7161-4737
Seoul National University · KRVietnam National University Ho Chi Minh City · VN

Funding

National Research Foundation of Korea NRF-2012M3A9C4048796/2017R1E1A2A02022658/2018R1A5A2024425
6 · The paper itself

Abstract

Introducing novel biomarkers for accurately detecting and differentiating rheumatoid arthritis (RA) and osteoarthritis (OA) using clinical samples is essential. In the current study, we searched for a novel data-driven gene signature of synovial tissues to differentiate RA from OA patients. Fifty-three RA, 41 OA, and 25 normal microarray-based transcriptome samples were utilized. The area under the curve random forests (RF) variable importance measurement was applied to seek the most influential differential genes between RA and OA. Five algorithms including RF, k-nearest neighbors (kNN), support vector machines (SVM), naïve-Bayes, and a tree-based method were employed for the classification. We found a 16-gene signature that could effectively differentiate RA from OA, including

Indexed as

diagnostic biomarkermachine learningmeta-analysisosteoarthritispathway analysisrheumatoid arthritis

Identifiers

PMID30621359
PMCPMC6352223
OpenAlexW2907063341

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.