Evidence map›Paper›PMID 30620734›Full record

ArticlePloS one2019

Deletion of genes involved in the ketogluconate metabolism, Entner-Doudoroff pathway, and glucose dehydrogenase increase local and invasive virulence phenotypes in Streptococcus pneumoniae.

Fen Z Hu, Jarosław E Król, Chen Hsuan Sherry Tsai, Rory A Eutsey, Luisa N Hiller, Bhaswati Sen, Azad Ahmed, Todd Hillman, Farrel J Buchinsky, Laura Nistico and 4 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 12 citations in OpenAlex.

  1. Influenza A Virus Coinfection AltersbioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Article
  4. Characterization of the Entner-Douderoff Pathway inbioRxiv : the preprint server for biology · 2023
    Article
  5. Frontiers in nutrition · 2022
    Article
  6. Review
  7. Article
  8. Metallomics : integrated biometal science · 2020
    Article
  9. Biochemistry · 2020
    Article
  10. Panel 1: Biotechnology, biomedical engineering and new models of otitis media.International journal of pediatric otorhinolaryngology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Fen Z HuCenter for Genomic Sciences, Institute for Molecular Medicine and Infectious Disease, Drexel University College of Medicine, Philadelphia, PA, United States of America.
Jarosław E KrólCenter for Genomic Sciences, Institute for Molecular Medicine and Infectious Disease, Drexel University College of Medicine, Philadelphia, PA, United States of America.ORCID 0000-0002-2755-8739
Chen Hsuan Sherry TsaiCenter for Genomic Sciences, Institute for Molecular Medicine and Infectious Disease, Drexel University College of Medicine, Philadelphia, PA, United States of America.
Rory A EutseyDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA, United States of America.
Luisa N HillerDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA, United States of America.
Bhaswati SenCenter for Genomic Sciences, Institute for Molecular Medicine and Infectious Disease, Drexel University College of Medicine, Philadelphia, PA, United States of America.
Azad AhmedCenter for Genomic Sciences, Institute for Molecular Medicine and Infectious Disease, Drexel University College of Medicine, Philadelphia, PA, United States of America.
Todd HillmanCenter of Excellence in Biofilm Research, Allegheny Health Network, Pittsburgh, PA, United States of America.
Farrel J BuchinskyCenter of Excellence in Biofilm Research, Allegheny Health Network, Pittsburgh, PA, United States of America.
Laura NisticoCenter of Excellence in Biofilm Research, Allegheny Health Network, Pittsburgh, PA, United States of America.
Bethany DiceCenter of Excellence in Biofilm Research, Allegheny Health Network, Pittsburgh, PA, United States of America.
Mark LongwellCenter of Excellence in Biofilm Research, Allegheny Health Network, Pittsburgh, PA, United States of America.
Edward HorseyCenter of Excellence in Biofilm Research, Allegheny Health Network, Pittsburgh, PA, United States of America.
Garth D EhrlichCenter for Genomic Sciences, Institute for Molecular Medicine and Infectious Disease, Drexel University College of Medicine, Philadelphia, PA, United States of America.
Allegheny Health Network · USInstitute for Molecular Medicine · USCarnegie Mellon University · US

Funding

THE ROLE OF BIOFILMS IN THE PATHOGENESIS OF OTORRHEAR01DC004173 · NIDCD · ALLEGHENY-SINGER RESEARCH INSTITUTE · PI EHRLICH, GARTH D. · 2000 to 2008
$7.0M
MOLECULAR ANALYSIS OF PATHOGENS IN OTITIS MEDIA BY PCRR01DC002148 · NIDCD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI EHRLICH, GARTH D. · 1994 to 2017
$6.5M
Impact of Antibiotics and Vaccines on the in vivo Evolution of S. pneumoniaeR01AI080935 · NIAID · ALLEGHENY-SINGER RESEARCH INSTITUTE · PI EHRLICH, GARTH D. · 2009 to 2010
$1.3M
NIAID NIH HHS R01 AI080935NIDCD NIH HHS R01 DC002148NIDCD NIH HHS R01 DC004173
6 · The paper itself

Abstract

Streptococcus pneumoniae displays increased resistance to antibiotic therapy following biofilm formation. A genome-wide search revealed that SP 0320 and SP 0675 (respectively annotated as 5-keto-D-gluconate-5-reductase and glucose dehydrogenase) contain the highest degree of homology to CsgA of Myxococcus xanthus, a signaling factor that promotes cell aggregation and biofilm formation. Single and double SP 0320 and SP 0675 knockout mutants were created in strain BS72; however, no differences were observed in the biofilm-forming phenotypes of mutants compared to the wild type strain. Using the chinchilla model of otitis media and invasive disease, all three mutants exhibited greatly increased virulence compared to the wild type strain (increased pus formation, tympanic membrane rupture, mortality rates). The SP 0320 gene is located in an operon with SP 0317, SP 0318 and SP 0319, which we bioinformatically annotated as being part of the Entner-Doudoroff pathway. Deletion of SP 0317 also resulted in increased mortality in chinchillas; however, mutations in SP 0318 and SP 0319 did not alter the virulence of bacteria compared to the wild type strain. Complementing the SP 0317, SP 0320 and SP 0675 mutant strains reversed the virulence phenotype. We prepared recombinant SP 0317, SP 0318, SP 0320 and SP 0675 proteins and confirmed their functions. These data reveal that disruption of genes involved in the degradation of ketogluconate, the Entner-Doudoroff pathway, and glucose dehydrogenase significantly increase the virulence of bacteria in vivo; two hypothetical models involving virulence triggered by reduced in carbon-flux through the glycolytic pathways are presented.

Indexed as

AnimalsBacterial ProteinsBiofilmsCarbohydrate MetabolismChinchillaGlucoseGlucose 1-DehydrogenaseGlycolysisOtitis MediaOxidoreductasesPhenotypePneumococcal InfectionsSequence DeletionStreptococcus pneumoniaeVirulenceBacterial Proteinsgluconate 5-dehydrogenaseGlucoseGlucose 1-DehydrogenaseOxidoreductases

Identifiers

PMID30620734
PMCPMC6324787
OpenAlexW2908818336

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.