Evidence map›Paper›PMID 30620551›Full record

ArticleACS chemical biology2019

Selective Small-Molecule Targeting of a Triple Helix Encoded by the Long Noncoding RNA, MALAT1.

Fardokht A Abulwerdi, Wenbo Xu, Abeer A Ageeli, Michael J Yonkunas, Gayatri Arun, Hyeyeon Nam, John S Schneekloth, Theodore Kwaku Dayie, David Spector, Nathan Baird and 1 more

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 129 papers.

0numbers the graph read from it
0cells of the map it votes in
129citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

129 citing papers in PubMed, 205 citations in OpenAlex.

  1. EvaluatingRNA biology · 2026
    Article
  2. Long noncoding RNAs in female malignancies: critical review of molecular mechanisms, clinical gaps, and therapeutic perspectives.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2026
    Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. A Bifunctional Small Molecule Degrader of the Long Noncoding RNA MALAT1 Triplex.Chemistry (Weinheim an der Bergstrasse, Germany) · 2026
    Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Review
  14. RNA Triple Helices: From Structures and Mechanisms to Therapeutic Targets.International journal of biological sciences · 2026
    Review
  15. Review
  16. Article
  17. Review
  18. Review
  19. Long non-coding RNAMolecular therapy. Nucleic acids · 2025
    Review
  20. Review

69 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Fardokht A AbulwerdiBasic Research Laboratory, Center for Cancer Research , National Cancer Institute , Frederick , Maryland 21702 , United States.ORCID 0000-0002-5669-9573
Wenbo XuCold Spring Harbor Laboratory , Cold Spring Harbor , New York 11724 , United States.
Abeer A AgeeliUniversity of the Sciences , 600 South 43rd Street , Philadelphia , Pennsylvania 19104 , United States.
Michael J YonkunasUniversity of the Sciences , 600 South 43rd Street , Philadelphia , Pennsylvania 19104 , United States.
Gayatri ArunCold Spring Harbor Laboratory , Cold Spring Harbor , New York 11724 , United States.
Hyeyeon NamCenter for Biomolecular Structure and Organization, Department of Chemistry and Biochemistry , University of Maryland , College Park , Maryland 20742 , United States.
John S SchneeklothChemical Biology Laboratory, Center for Cancer Research , National Cancer Institute , Frederick , Maryland 21702 , United States.ORCID 0000-0001-7459-783X
Theodore Kwaku DayieCenter for Biomolecular Structure and Organization, Department of Chemistry and Biochemistry , University of Maryland , College Park , Maryland 20742 , United States.
David SpectorCold Spring Harbor Laboratory , Cold Spring Harbor , New York 11724 , United States.
Nathan BairdUniversity of the Sciences , 600 South 43rd Street , Philadelphia , Pennsylvania 19104 , United States.ORCID 0000-0003-0537-2594
Stuart F J Le GriceBasic Research Laboratory, Center for Cancer Research , National Cancer Institute , Frederick , Maryland 21702 , United States.
Cold Spring Harbor Laboratory · USUniversity of the Sciences · USNational Cancer Institute · USUniversity of Maryland, College Park · USFrederick National Laboratory for Cancer Research · US

Funding

VIRAL TRANSACTIVATIONP01CA013106 · NCI · COLD SPRING HARBOR LABORATORY · PI SCOTT KEITH LYONS · 1985 to 2026
$116.8M
Identification of Nucleic Acid Binding Small MoleculesZIABC011585 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SCHNEEKLOTH, JOHN · 2014 to 2025
$18.6M
The Center for HIV RNA Studies (CRNA)U54GM103297 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SUMMERS, MICHAEL FINLEY · 2017 to 2018
$10.2M
Viral and Host Proteins as Therapeutic TargetsZIABC010494 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI LE GRICE, STUART F. J. · 2009 to 2021
$9.0M
Structural studies with regulatory RNAsZIABC011824 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI LE GRICE, STUART F. J. · 2018 to 2021
$1.6M
Viral and Host Proteins as Therapeutic TargetsZ01BC010494 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI LE GRICE, STUART F. J. · 2003 to 2008
$1.0M
Regulating RNA function by modulating RNA folding with exogenous ligandsK22HL121113 · NHLBI · UNIVERSITY OF THE SCIENCES PHILADELPHIA · PI BAIRD, NATHAN · 2015 to 2017
$732k
Intramural NIH HHS Z01 BC010494Intramural NIH HHS ZIA BC010494Intramural NIH HHS ZIA BC011824NCI NIH HHS P01 CA013106NHLBI NIH HHS K22 HL121113NIGMS NIH HHS U54 GM103297
6 · The paper itself

Abstract

Metastasis-associated lung adenocarcinoma transcript 1 ( Malat1/ MALAT1, mouse/human), a highly conserved long noncoding (lnc) RNA, has been linked with several physiological processes, including the alternative splicing, nuclear organization, and epigenetic modulation of gene expression. MALAT1 has also been implicated in metastasis and tumor proliferation in multiple cancer types. The 3' terminal stability element for nuclear expression (ENE) assumes a triple-helical configuration that promotes its nuclear accumulation and persistent function. Utilizing a novel small molecule microarray strategy, we identified multiple Malat1 ENE triplex-binding chemotypes, among which compounds 5 and 16 reduced Malat1 RNA levels and branching morphogenesis in a mammary tumor organoid model. Computational modeling and Förster resonance energy transfer experiments demonstrate distinct binding modes for each chemotype, conferring opposing structural changes to the triplex. Compound 5 modulates Malat1 downstream genes without affecting Neat1, a nuclear lncRNA encoded in the same chromosomal region as Malat1 with a structurally similar ENE triplex. Supporting this observation, the specificity of compound 5 for Malat1 over Neat1 and a virus-coded ENE was demonstrated by nuclear magnetic resonance spectroscopy. Small molecules specifically targeting the MALAT1 ENE triplex lay the foundation for new classes of anticancer therapeutics and molecular probes for the treatment and investigation of MALAT1-driven cancers.

Indexed as

AnimalsHumansMiceMolecular Docking SimulationProtein BindingRNA, Long NoncodingMALAT1 long non-coding RNA, humanRNA, Long Noncoding

Identifiers

PMID30620551
PMCPMC6709583
OpenAlexW2910703604

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.