Evidence map›Paper›PMID 30619943›Full record

ArticleJGH open : an open access journal of gastroenterology and hepatology2018

Validation of a novel single-drop rapid human leukocyte antigen-DQ2/-DQ8 typing method to identify subjects susceptible to celiac disease.

Anil K Verma, Alka Singh, Simona Gatti, Elena Lionetti, Tiziana Galeazzi, Chiara Monachesi, Elisa Franceschini, Vineet Ahuja, Carlo Catassi, Govind K Makharia

Open access · goldAbstract read
In one paragraph

Article in JGH open : an open access journal of gastroenterology and hepatology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 3 pooled it
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 3 syntheses or guidelines pooled it, 17 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Review
  5. Review
  6. Article
  7. Article
  8. The puzzling relationship between human leukocyte antigen HLA genes and celiac disease.Saudi journal of gastroenterology : official journal of the Saudi Gastroenterology Association
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Anil K VermaCeliac Disease Research Laboratory, Department of Pediatrics Università Politecnica delle Marche Ancona Italy.
Alka SinghDepartment of Gastroenterology and Human Nutrition All India Institute of Medical Sciences New Delhi India.
Simona GattiDepartment of Pediatrics Università Politecnica delle Marche Ancona Italy.
Elena LionettiDepartment of Pediatrics Università Politecnica delle Marche Ancona Italy.
Tiziana GaleazziCeliac Disease Research Laboratory, Department of Pediatrics Università Politecnica delle Marche Ancona Italy.
Chiara MonachesiCeliac Disease Research Laboratory, Department of Pediatrics Università Politecnica delle Marche Ancona Italy.
Elisa FranceschiniDepartment of Pediatrics Università Politecnica delle Marche Ancona Italy.
Vineet AhujaDepartment of Gastroenterology and Human Nutrition All India Institute of Medical Sciences New Delhi India.
Carlo CatassiDepartment of Pediatrics Università Politecnica delle Marche Ancona Italy.
Govind K MakhariaDepartment of Gastroenterology and Human Nutrition All India Institute of Medical Sciences New Delhi India.ORCID 0000-0002-2474-2194
Marche Polytechnic University · ITAll India Institute of Medical Sciences · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND AND

aimHuman leukocyte antigen (HLA)-DQ2 and/or -DQ8 is an essential risk factor for celiac disease (CD). About 90-95% of patients with CD carry HLA-DQ2/-DQ8 alleles, and HLA-DQ typing is considered an additional diagnostic test. Conventional polymerase chain reaction (PCR)-based HLA-DQ typing methods are expensive, complex, and a time-consuming process. We assessed the efficacy of a novel HLA-DQ typing method, "Celiac Gene Screen," for the detection of CD-associated HLA haplotypes.

methodsTo assess the diagnostic performance of the Celiac Gene Screen test, 100 ethylenediaminetetraacetic acid (EDTA) blood samples, already characterized by the conventional HLA-DQ typing method, that is, PCR sequence-specific oligonucleotide probes (PCR-SSOP), a concordance between both the methods were explored. For validity, a further 300 EDTA blood samples with unknown HLA-DQ status were genotyped using the Celiac Gene Screen test, including 141 samples from CD, 56 first-degree relatives (FDRs) of CD and 103 samples from controls.

resultsOf the 100 samples with known status of HLA-DQ alleles, 79 samples were HLA-DQ2 and/or -DQ8 positive, and 21 samples were HLA-DQ2 and/or -DQ8 negative by conventional PCR. These 100 samples were re-typed using the Celiac Gene screen kit; all 79 positives were typed positive, and 21 negatives were typed negative for HLA-DQ alleles. Among 300 samples with unknown HLA-DQ status, 118 of 141 (84%) patients with CD, 48 of 56 (86%) FDRs of CD, and 52 of 103 (50%) controls typed positive for HLA-DQ alleles.

conclusionsThe Celiac Gene Screen HLA-DQ typing method showed excellent concordance with the conventional HLA-DQ typing method and could be a cost-reducing and effective method for CD-associated HLA screening.

Indexed as

allelesceliac diseasegenotypingHLApolymerase chain reactionsusceptibility

Identifiers

PMID30619943
PMCPMC6308057
OpenAlexW2899191518

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.