Evidence map›Paper›PMID 30619307›Full record

ArticleFrontiers in immunology2018

Structural Model of the mIgM B-Cell Receptor Transmembrane Domain From Self-Association Molecular Dynamics Simulations.

Mario D Friess, Kristyna Pluhackova, Rainer A Böckmann

Abstract read
In one paragraph

Article in Frontiers in immunology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. The role ofFrontiers in immunology · 2023
    Review
  7. T cell and B cell antigen receptors share a conserved core transmembrane structure.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  8. Article
  9. Modulatory Effects of Mercury (II) Chloride (HgClEnvironmental toxicology and chemistry · 2021
    Article
  10. Article
  11. Methods for sequence and structural analysis of B and T cell receptor repertoires.Computational and structural biotechnology journal · 2020
    Review
  12. A symmetric geometry of transmembrane domains inside the B cell antigen receptor complex.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Mario D FriessDepartment of Biology, Computational Biology, Friedrich-Alexander University of Erlangen-Nürnberg, Erlangen, Germany.
Kristyna PluhackovaDepartment of Biology, Computational Biology, Friedrich-Alexander University of Erlangen-Nürnberg, Erlangen, Germany.
Rainer A BöckmannDepartment of Biology, Computational Biology, Friedrich-Alexander University of Erlangen-Nürnberg, Erlangen, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Antigen binding to B-cell antigen receptors (BCRs) followed by signaling initiates the humoral immune response. The signaling is intimately coupled to nanoclustering of BCRs and their sorting to specific membrane domains, a process that is ruled by interactions between the BCR transmembrane domain and lipids. While the structure of the extracellular domains of BCRs has been resolved, little is known about the configuration of the constituting four immunoglobulin domains spanning the membrane. Here, we modeled the structure of the transmembrane (TM) domain of the IgM B-cell receptor using self-assembly coarse-grained molecular dynamics simulations. The obtained quaternary structure was validated against available experimental data and atomistic simulations. The IgM-BCR-TM domain configuration shows a 1:1 stoichiometry between the homodimeric membrane-bound domain of IgM (mIgM) and a Ig-α/Ig-β heterodimer. The mIgM homodimer is based on an asymmetric association of two mIgM domains. We show that a specific site of the Ig-α/Ig-β heterodimer is responsible for the association of IgM-BCRs with lipid rafts. Our results further suggest that this site is blocked in small-sized IgM-BCR clusters. The BCR TM structure provides a molecular basis for the previously suggested dissociation activation model of B-cell receptors. Self-assembly molecular dynamics simulations at the coarse-grained scale here proved as a versatile tool in the study of receptor complexes.

Indexed as

Immunity, HumoralB-LymphocytesCell MembraneImmunoglobulin MModels, StructuralMolecular Dynamics SimulationProtein DomainsProtein Structure, QuaternaryReceptors, Antigen, B-CellImmunoglobulin MReceptors, Antigen, B-CellB-cell receptorcoarse-grained simulationsdissociation activation modelmolecular dynamics simulationsnanodomainsself-assemblytransmembrane domain

Identifiers

PMID30619307
PMCPMC6304377

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.