Evidence map›Paper›PMID 30617258›Full record

ArticleNature neuroscience2019

Pathological priming causes developmental gene network heterochronicity in autistic subject-derived neurons.

Simon T Schafer, Apua C M Paquola, Shani Stern, David Gosselin, Manching Ku, Monique Pena, Thomas J M Kuret, Marvin Liyanage, Abed AlFatah Mansour, Baptiste N Jaeger and 4 more

Abstract read
In one paragraph

Article in Nature neuroscience, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 161 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
161citing papers in PubMed, 1 pooled it
24.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

161 citing papers in PubMed, 1 synthesis or guideline pooled it, 313 citations in OpenAlex.

  1. Pooled it
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  10. Modulating alternative splicing ofScience translational medicine · 2026
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  20. Functional Neurogenomics to Dissect Disease Mechanisms Across Models.Annual review of genomics and human genetics · 2025
    Review

101 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 5 countries.

Simon T SchaferLaboratory of Genetics, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-2370-3652
Apua C M PaquolaLaboratory of Genetics, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Shani SternLaboratory of Genetics, The Salk Institute for Biological Studies, La Jolla, CA, USA.
David GosselinCentre de Recherche du Centre Hospitalier Universitaire de Québec-Université Laval, Département de Médecine Moléculaire, Faculté de Médecine, Université Laval, Québec, Canada.
Manching KuNext Generation Sequencing Core, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID http://orcid.org/0000-0001-5168-4308
Monique PenaLaboratory of Genetics, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Thomas J M KuretLaboratory of Genetics, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-3931-4923
Marvin LiyanageLaboratory of Genetics, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Abed AlFatah MansourLaboratory of Genetics, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Baptiste N JaegerLaboratory of Genetics, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Maria C MarchettoLaboratory of Genetics, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Christopher K GlassDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, USA.
Jerome MertensLaboratory of Genetics, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Fred H GageLaboratory of Genetics, The Salk Institute for Biological Studies, La Jolla, CA, USA. gage@salk.edu.ORCID http://orcid.org/0000-0002-0938-4106
Salk Institute for Biological Studies · USCentre hospitalier universitaire de Québec · CAUniversity of California San Diego · US

Funding

Viral Vector Core (VVC)P30CA014195 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI Ye Zheng · 1985 to 2026
$82.8M
Single-Cell Approaches to Reveal How Jumping Genes Individualize Neural CircuitsR01MH095741 · NIMH · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI GAGE, FRED H · 2011 to 2015
$6.5M
Mechanisms controlling human microglia gene expressionR01NS096170 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GLASS, CHRISTOPHER K · 2016 to 2025
$4.3M
Assessing cellular aging in old and rejuvenated neurons from Alzheimer patientsR01AG056306 · NIA · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI GAGE, FRED H · 2017 to 2021
$2.4M
Functional Analysis of Adult Hippocampal NeurogenesisR01MH090258 · NIMH · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI GAGE, FRED H · 2010 to 2014
$2.3M
Transcriptional signature profiling of IGF1-treated neural cells from idiopathic autistic patientsR03MH115426 · NIMH · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI MARCHETTO, MARIA CAROLINA · 2018 to 2019
$192k
NCI NIH HHS P30 CA014195NIA NIH HHS R01 AG056306NIMH NIH HHS R01 MH090258NIMH NIH HHS R01 MH095741NIMH NIH HHS R03 MH115426NINDS NIH HHS R01 NS096170
6 · The paper itself

Abstract

Autism spectrum disorder (ASD) is thought to emerge during early cortical development. However, the exact developmental stages and associated molecular networks that prime disease propensity are elusive. To profile early neurodevelopmental alterations in ASD with macrocephaly, we monitored subject-derived induced pluripotent stem cells (iPSCs) throughout the recapitulation of cortical development. Our analysis revealed ASD-associated changes in the maturational sequence of early neuron development, involving temporal dysregulation of specific gene networks and morphological growth acceleration. The observed changes tracked back to a pathologically primed stage in neural stem cells (NSCs), reflected by altered chromatin accessibility. Concerted over-representation of network factors in control NSCs was sufficient to trigger ASD-like features, and circumventing the NSC stage by direct conversion of ASD iPSCs into induced neurons abolished ASD-associated phenotypes. Our findings identify heterochronic dynamics of a gene network that, while established earlier in development, contributes to subsequent neurodevelopmental aberrations in ASD.

Indexed as

Gene Regulatory NetworksAutism Spectrum DisorderHumansInduced Pluripotent Stem CellsInhibitory Postsynaptic PotentialsNerve NetNeural Stem CellsNeurons

Identifiers

PMID30617258
PMCPMC6402576
OpenAlexW2906812748

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.