ArticleBMC genomics2019
Transcriptomic de novo analysis of pitaya (Hylocereus polyrhizus) canker disease caused by Neoscytalidium dimidiatum.
Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed.
- Light Supplementation in Pitaya Orchards Induces Pitaya Flowering in Winter by Promoting Phytohormone Biosynthesis.International journal of molecular sciences · 2024Article
- Single-cell and spatial RNA sequencing reveal the spatiotemporal trajectories of fruit senescence.Nature communications · 2024Article
- Characterization and In Vitro Fungicide Sensitivity of TwoJournal of fungi (Basel, Switzerland) · 2023Article
- Plant-AssociatedJournal of fungi (Basel, Switzerland) · 2023Review
- Identification of RT-qPCR reference genes suitable for gene function studies in the pitaya canker disease pathogen Neoscytalidium dimidiatum.Scientific reports · 2022Article
- Omics analyses indicate sdhC/D act as hubs of early response of E. coli to antibiotics.Archives of microbiology · 2022Article
- Transcriptome and Metabolome Analyses Provide Insights Into the Composition and Biosynthesis of Grassy Aroma Volatiles in White-Fleshed Pitaya.ACS omega · 2022Article
- Genomic Approaches for Improvement of Tropical Fruits: Fruit Quality, Shelf Life and Nutrient Content.Genes · 2021Review
- Leaf Transcriptome Analysis of Broomcorn Millet Uncovers Key Genes and Pathways in Response toInternational journal of molecular sciences · 2021Article
- The genome of a thorny species: comparative genomic analysis among South and North American Cactaceae.Planta · 2021Article
- The chromosome-level genome of dragon fruit reveals whole-genome duplication and chromosomal co-localization of betacyanin biosynthetic genes.Horticulture research · 2021Article
- Transcriptome Analysis ofFrontiers in plant science · 2021Article
- Contribution of anthocyanin pathways to fruit flesh coloration in pitayas.BMC plant biology · 2020Article
- Article
- Molecular characterization and expression analysis of pitaya (Hylocereus polyrhizus) HpLRR genes in response to Neoscytalidium dimidiatum infection.BMC plant biology · 2020Article
- Transcriptomic Analysis Reveals Cu/Zn SODs Acting as Hub Genes of SODs inAntioxidants (Basel, Switzerland) · 2020Article
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8 authors.
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Abstract
backgroundCanker disease caused by Neoscytalidium dimidiatum is the most serious disease that attacks the pitaya industry. One pathogenic fungus, referred to as ND8, was isolated from the wild-type red-fleshed pitaya (Hylocereus polyrhizus) of Hainan Province. In the early stages of this disease, stems show little spots and a loss of green color. These spots then gradually spread until the stems became rotten due to infection by various strains. Canker disease caused by Neoscytalidium dimidiatum poses a significant threat to pitaya commercial plantations with the growth of stems and the yields, quality of pitaya fruits. However, a lack of transcriptomic and genomic information hinders our understanding of the molecular mechanisms underlying the pitaya defense response.
resultsWe investigated the host responses of red-fleshed pitaya (H. polyrhizus) cultivars against N. dimidiatum using Illumina RNA-Seq technology. Significant expression profiles of 23 defense-related genes were further analyzed by qRT-PCR. The total read length based on RNA-Seq was 25,010,007; mean length was 744, the N50 was 1206, and the guanine-cytosine content was 44.48%. Our investigation evaluated 33,584 unigenes, of which 6209 (18.49%) and 27,375 (81.51%) were contigs and singlets, respectively. These unigenes shared a similarity of 16.62% with Vitis vinifera, 7.48% with Theobroma cacao, 6.6% with Nelumbo nucifera and 5.35% with Jatropha curcas. The assembled unigenes were annotated into non-redundant (NR, 25161 unigenes), Kyoto Encyclopedia of Genes and Genomes (KEGG, 17895 unigenes), Clusters of Orthologous Groups (COG, 10475 unigenes), InterPro (19,045 unigenes), and Swiss-Prot public protein databases (16,458 unigenes). In addition, 24 differentially expressed genes, which were mainly associated with plant pathology pathways, were analyzed in-depth.
conclusionsThis study provides a basis for further in-depth research on the protein function of the annotated unigene assembly with cDNA sequences.
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