Evidence map›Paper›PMID 30615628›Full record

ArticlePloS one2019

Sequence analysis and confirmation of the type IV pili-associated proteins PilY1, PilW and PilV in Acidithiobacillus thiooxidans.

Elvia Alfaro-Saldaña, Araceli Hernández-Sánchez, O Araceli Patrón-Soberano, Marizel Astello-García, J Alfredo Méndez-Cabañas, J Viridiana García-Meza

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.1field-weighted citation impact, top 57% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Deciphering the enigmatic PilY1 ofBiochemistry and biophysics reports · 2024
    Article
  3. Understanding a Core Pilin of the Type IVa Pili ofJournal of microbiology and biotechnology · 2024
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Elvia Alfaro-SaldañaGeomicrobiología, Metalurgia, Universidad Autónoma de San Luis Potosí, San Luis Potosí, México.
Araceli Hernández-SánchezBiofísica Molecular, Instituto de Física, Universidad Autónoma de San Luis Potosí, San Luis Potosí, México.
O Araceli Patrón-SoberanoDivisión de Biología Molecular, Instituto Potosino de Investigación Científica y Tecnológica, San Luis Potosí, México.ORCID 0000-0001-6272-2226
Marizel Astello-GarcíaGeomicrobiología, Metalurgia, Universidad Autónoma de San Luis Potosí, San Luis Potosí, México.
J Alfredo Méndez-CabañasBiofísica Molecular, Instituto de Física, Universidad Autónoma de San Luis Potosí, San Luis Potosí, México.
J Viridiana García-MezaGeomicrobiología, Metalurgia, Universidad Autónoma de San Luis Potosí, San Luis Potosí, México.ORCID 0000-0002-5722-3016
Autonomous University of San Luis Potosí · MXInstitute for Scientific and Technological Research · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Acidithiobacillus thiooxidans is an acidophilic chemolithoautotrophic bacterium widely used in the mining industry due to its metabolic sulfur-oxidizing capability. The biooxidation of sulfide minerals is enhanced through the attachment of At. thiooxidans cells to the mineral surface. The Type IV pili (TfP) of At. thiooxidans may play an important role in the bacteria attachment since TfP play a key adhesive role in the attachment and colonization of different surfaces. In this work, we report for the first time the mRNA sequence of three TfP proteins from At. thiooxidans, the adhesin protein PilY1 and the TfP pilins PilW and PilV. The nucleotide sequences of these TfP proteins show changes in some nucleotide positions with respect to the corresponding annotated sequences. The bioinformatic analyses and 3D-modeling of protein structures sustain their classification as TfP proteins, as structural homologs of the corresponding proteins of Ps. aeruginosa, results that sustain the role of PilY1, PilW and PilV in pili assembly. Also, that PilY1 comprises the conserved Neisseria-PilC (superfamily) domain of the tip-associated adhesin, while PilW of the superfamily of putative TfP assembly proteins and PilV belongs to the superfamily of TfP assembly protein. In addition, the analyses suggested the presence of specific functional domains involved in adhesion, energy transduction and signaling functions. The phylogenetic analysis indicated that the PilY1 of Acidithiobacillus genus forms a cohesive group linked with iron- and/or sulfur-oxidizing microorganisms from acid mine drainage or mine tailings.

Indexed as

PhylogenySequence Analysis, DNAAcidithiobacillus thiooxidansFimbriae, BacterialFimbriae ProteinsNeisseriaProtein DomainsPseudomonas aeruginosaFimbriae Proteins

Identifiers

PMID30615628
PMCPMC6322766
OpenAlexW2950147627

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.