Evidence map›Paper›PMID 30614003›Full record

ArticleThe New phytologist2018

Alison Mello, Idan Efroni, Ramin Rahni, Kenneth D Birnbaum

Abstract read
In one paragraph

Article in The New phytologist, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Genome-Wide Mining ofCurrent issues in molecular biology · 2023
    Article
  6. Article
  7. Article
  8. Review
  9. Expression Atlas ofThe Plant cell · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Alison MelloCenter for Genomics and Systems Biology, Department of Biology, New York University, 12 Waverly Place, New York, NY, 10003, USA.ORCID https://orcid.org/0000-0003-0386-8078
Idan EfroniThe Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University, PO Box 12, Rehovot, 76100, Israel.ORCID https://orcid.org/0000-0002-0219-8685
Ramin RahniCenter for Genomics and Systems Biology, Department of Biology, New York University, 12 Waverly Place, New York, NY, 10003, USA.ORCID https://orcid.org/0000-0001-7735-0947
Kenneth D BirnbaumCenter for Genomics and Systems Biology, Department of Biology, New York University, 12 Waverly Place, New York, NY, 10003, USA.ORCID https://orcid.org/0000-0002-8423-6859

Funding

Mapping the Trajectory of Cell Fate TransitionsR01GM078279 · NIGMS · NEW YORK UNIVERSITY · PI BIRNBAUM, KENNETH DAVID · 2006 to 2019
$4.2M
TRAINING PROGRAM IN DEVELOPMENTAL GENETICS.T32HD007520 · NICHD · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI TREISMAN, JESSICA E · 1999 to 2023
$3.9M
HHMI International Research Scholar GrantNational Institutes of Health R01GM078279NICHD NIH HHS T32 HD007520NIGMS NIH HHS R01 GM078279
6 · The paper itself

Abstract

The genus Selaginella resides in an early branch of the land plant lineage that possesses a vasculature and roots. The majority of the Selaginella root system is shoot borne and emerges through a distinctive structure known as the rhizophore, the organ identity of which has been a long-debated question. The rhizophore of Selaginella moellendorffii - a model for the lycophytes - shows plasticity to develop into a root or shoot up until 8 d after angle meristem emergence, after which it is committed to root fate. We subsequently use morphology and plasticity to define the stage of rhizophore identity. Transcriptomic analysis of the rhizophore during its plastic stage reveals that, despite some resemblance to the root meristem, rhizophore gene expression patterns are largely distinct from both shoot and root meristems. Based on this transcriptomic analysis and on historical anatomical work, we conclude that the rhizophore is a distinct organ with unique features.

Indexed as

early meristemlycophyte evolutionlycophyte rootsrhizophoreSelaginella moellendorffii

Identifiers

PMID30614003
PMCPMC6559876

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.