Evidence map›Paper›PMID 30613779›Full record

ArticleScience advances2019

Autonomously designed free-form 2D DNA origami.

Hyungmin Jun, Fei Zhang, Tyson Shepherd, Sakul Ratanalert, Xiaodong Qi, Hao Yan, Mark Bathe

Abstract read
In one paragraph

Article in Science advances, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed.

  1. Article
  2. Programmable DNA Logic Systems for Applications in Biomedicine.Chemistry (Weinheim an der Bergstrasse, Germany) · 2026
    Review
  3. Article
  4. Review
  5. A nanoscale Jitterbug transformer from DNA.Nature communications · 2026
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. 2D Assemblies Based on a Tetraphenylethylene D,L-Cyclic Peptide Scaffold.Angewandte Chemie (International ed. in English) · 2025
    Article
  11. Review
  12. Review
  13. Article
  14. Wireframe DNA Origami Capable of Vertex-protruding Transformation.Chembiochem : a European journal of chemical biology · 2025
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Folding molecular origami from ribosomal RNA.Journal of nanobiotechnology · 2024
    Article

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Hyungmin JunDepartment of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA.ORCID 0000-0002-7108-1288
Fei ZhangThe Biodesign Institute and School of Molecular Sciences, Arizona State University, Tempe, AZ 85287, USA.ORCID 0000-0002-3177-7547
Tyson ShepherdDepartment of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA.ORCID 0000-0001-7122-1917
Sakul RatanalertDepartment of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA.ORCID 0000-0002-1766-807X
Xiaodong QiThe Biodesign Institute and School of Molecular Sciences, Arizona State University, Tempe, AZ 85287, USA.ORCID 0000-0001-8200-6630
Hao YanThe Biodesign Institute and School of Molecular Sciences, Arizona State University, Tempe, AZ 85287, USA.ORCID 0000-0001-7397-9852
Mark BatheDepartment of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA.ORCID 0000-0002-6199-6855

Funding

DNA Origami Nanostructures for Single-Cell Multi-gene Analysis without Single Cell SortingR21AI125827 · NIAID · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI BLATTMAN, JOSEPH N · 2016 to 2017
$410k
NIAID NIH HHS R21 AI125827
6 · The paper itself

Abstract

Scaffolded DNA origami offers the unique ability to organize molecules in nearly arbitrary spatial patterns at the nanometer scale, with wireframe designs further enabling complex 2D and 3D geometries with irregular boundaries and internal structures. The sequence design of the DNA staple strands needed to fold the long scaffold strand to the target geometry is typically performed manually, limiting the broad application of this materials design paradigm. Here, we present a fully autonomous procedure to design all DNA staple sequences needed to fold any free-form 2D scaffolded DNA origami wireframe object. Our algorithm uses wireframe edges consisting of two parallel DNA duplexes and enables the full autonomy of scaffold routing and staple sequence design with arbitrary network edge lengths and vertex angles. The application of our procedure to geometries with both regular and irregular external boundaries and variable internal structures demonstrates its broad utility for nanoscale materials science and nanotechnology.

Indexed as

Nucleic Acid ConformationAlgorithmsBase SequenceDNAHumansMatrix Attachment RegionsNanostructuresNanotechnologyNucleotidesSoftwareDNANucleotides

Identifiers

PMID30613779
PMCPMC6314877

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.