Evidence map›Paper›PMID 30612271›Full record

ArticleGlycoconjugate journal2019

Insights into the effects of N-glycosylation on the characteristics of the VC1 domain of the human receptor for advanced glycation end products (RAGE) secreted by Pichia pastoris.

Genny Degani, Alberto Barbiroli, Paula Magnelli, Stefania Digiovanni, Alessandra Altomare, Giancarlo Aldini, Laura Popolo

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Glycoconjugate journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Genny DeganiDepartment of Biosciences (DBS), University of Milan, Via Celoria 26, 20133, Milan, Italy.
Alberto BarbiroliDepartment of Food, Environmental and Nutritional Sciences (DeFENS), University of Milan, Via Celoria 2, 20133, Milan, Italy.
Paula MagnelliNew England Biolabs, Inc., Ipswich, MA, 01938, USA.
Stefania DigiovanniDepartment of Biosciences (DBS), University of Milan, Via Celoria 26, 20133, Milan, Italy.
Alessandra AltomareDepartment of Pharmaceutical Sciences (DISFARM), University of Milan, Via Mangiagalli 25, Milan, Italy.
Giancarlo AldiniDepartment of Pharmaceutical Sciences (DISFARM), University of Milan, Via Mangiagalli 25, Milan, Italy.
Laura PopoloDepartment of Biosciences (DBS), University of Milan, Via Celoria 26, 20133, Milan, Italy. laura.popolo@unimi.it.ORCID 0000-0002-5590-0167
University of Milan · ITNew England Biolabs (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Advanced glycation end products (AGEs) and advanced lipoxidation end products (ALEs), resulting from non-enzymatic modifications of proteins, are potentially harmful to human health. They directly act on proteins, affecting structure and function, or through receptor-mediated mechanisms. RAGE, a type I transmembrane glycoprotein, was identified as a receptor for AGEs. RAGE is involved in chronic inflammation, oxidative stress-based diseases and ageing. The majority of RAGE ligands bind to the VC1 domain. This domain was successfully expressed and secreted by Pichia pastoris. Out of two N-glycosylation sites, one (Asn25) was fully occupied while the other (Asn81) was under-glycosylated, generating two VC1 variants, named p36 and p34. Analysis of N-glycans and of their influence on VC1 properties were here investigated. The highly sensitive procainamide labeling method coupled to ES-MS was used for N-glycan profiling. N-glycans released from VC1 ranged from Man

Indexed as

Molecular Dynamics SimulationGlycosylationHumansPichiaPolysaccharidesProtein DomainsProtein Processing, Post-TranslationalProtein StabilityReceptor for Advanced Glycation End ProductsPolysaccharidesReceptor for Advanced Glycation End ProductsLC/mass spectrometryPichia pastorisProtein glycoformsProtein-protein interactionsReceptor for advanced glycation end products (RAGE)Released glycan profilingThermal stability

Identifiers

PMID30612271
OpenAlexW2907367845

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.