Evidence map›Paper›PMID 30612184›Full record

ArticleMicrobial ecology2019

Vertical Distribution of Bathyarchaeotal Communities in Mangrove Wetlands Suggests Distinct Niche Preference of Bathyarchaeota Subgroup 6.

Jie Pan, Yulian Chen, Yongming Wang, Zhichao Zhou, Meng Li

Abstract read
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In one paragraph

Article in Microbial ecology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  12. Isolation and Genomics ofMicrobiology spectrum · 2023
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  13. Phenotypic and genomic characterization ofFrontiers in microbiology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jie PanInstitute for Advanced Study, Shenzhen University, Shenzhen, Guangdong, People's Republic of China.
Yulian ChenInstitute for Advanced Study, Shenzhen University, Shenzhen, Guangdong, People's Republic of China.
Yongming WangInstitute for Advanced Study, Shenzhen University, Shenzhen, Guangdong, People's Republic of China.
Zhichao ZhouInstitute for Advanced Study, Shenzhen University, Shenzhen, Guangdong, People's Republic of China.
Meng LiInstitute for Advanced Study, Shenzhen University, Shenzhen, Guangdong, People's Republic of China. limeng848@szu.edu.cn.ORCID http://orcid.org/0000-0001-8675-0758

Funding

National Natural Science Foundation of China 31600093National Natural Science Foundation of China 41506163,31622002,91851105
6 · The paper itself

Abstract

Bathyarchaeota is a diverse, abundant, and widespread archaeal phylum that may play an important role in global carbon cycling. The vertical distribution of Bathyarchaeota and environmental impact on bathyarchaeotal community in deep-sea and lake sediments are known; however, little information is available on Bathyarchaeota in eutrophic and brackish environments, such as mangrove wetlands. In the current study, we investigated the bathyarchaeotal community in the mangrove ecosystem of Futian Nature Reserve, Shenzhen. By slicing the profile into 2-cm layers from the surface to bottom, 110 sediment samples were obtained from three mangrove and three mud flat profiles. High-throughput sequencing of archaeal 16S rRNA genes, quantification of bathyarchaeotal 16S rRNA genes with optimized quantitative primers, and the ensuing statistical analyses revealed the vertical distribution of Bathyarchaeota in the mangrove ecosystem, indicating that Bathyarchaeota was the dominant archaeal phylum therein, with Bathyarchaeota subgroups 6, 8, 15, and 17 as the most abundant subgroups. The abundance of Bathyarchaeota was higher in the mangrove than in the mud flat and other oligotrophic or freshwater habitats. Total organic carbon (TOC) and nitric oxide were significantly correlated with the abundance of Bathyarchaeota, and pH was the major factor shaping the community composition. Further, the data suggested that Bathyarchaeota subgroup 6 preferentially dwelled in slightly acidic, high TOC, and subsurface environments, indicating a potentially distinct role in the global geochemical cycle. These findings expand the knowledge of the distribution and niche preference of Bathyarchaeota, emphasizing the need for continuous characterization of bathyarchaeotal subgroups.

Indexed as

BiodiversityArchaeaCarbon CycleDNA, ArchaealGeologic SedimentsHigh-Throughput Nucleotide SequencingLakesPhylogenyRNA, Ribosomal, 16SSeawaterWetlandsDNA, ArchaealRNA, Ribosomal, 16SAcidicBathyarchaeotaMangrove wetlandPrimerSubgroup 6Vertical distribution

Identifiers

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.