Evidence map›Paper›PMID 30610624›Full record

ReviewMethods in molecular biology (Clifton, N.J.)2019

Plant DNA Repair Pathways and Their Applications in Genome Engineering.

Qiudeng Que, Zhongying Chen, Tim Kelliher, David Skibbe, Shujie Dong, Mary-Dell Chilton

Abstract readReview
PubMed Publisher
In one paragraph

Review in Methods in molecular biology (Clifton, N.J.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. CRISPR-Cas systems and applications for crop bioengineering.Frontiers in bioengineering and biotechnology · 2024
    Review
  4. Review
  5. Review
  6. Review
  7. Review
  8. Targeted DNA insertion in plants.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Qiudeng QueSeeds Research, Syngenta Crop Protection, LLC, Research Triangle Park, NC, USA. qiudeng.que@syngenta.com.
Zhongying ChenSeeds Research, Syngenta Crop Protection, LLC, Research Triangle Park, NC, USA.
Tim KelliherSeeds Research, Syngenta Crop Protection, LLC, Research Triangle Park, NC, USA.
David SkibbeSeeds Research, Syngenta Crop Protection, LLC, Research Triangle Park, NC, USA.
Shujie DongSeeds Research, Syngenta Crop Protection, LLC, Research Triangle Park, NC, USA.
Mary-Dell ChiltonSeeds Research, Syngenta Crop Protection, LLC, Research Triangle Park, NC, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Remarkable progress in the development of technologies for sequence-specific modification of primary DNA sequences has enabled the precise engineering of crops with novel characteristics. These programmable sequence-specific modifiers include site-directed nucleases (SDNs) and base editors (BEs). Currently, these genome editing machineries can be targeted to specific chromosomal locations to induce sequence changes. However, the sequence mutation outcomes are often greatly influenced by the type of DNA damage being generated, the status of host DNA repair machinery, and the presence and structure of DNA repair donor molecule. The outcome of sequence modification from repair of DNA double-strand breaks (DSBs) is often uncontrollable, resulting in unpredictable sequence insertions or deletions of various sizes. For base editing, the precision of intended edits is much higher, but the efficiency can vary greatly depending on the type of BE used or the activity of the endogenous DNA repair systems. This article will briefly review the possible DNA repair pathways present in the plant cells commonly used for generating edited variants for genome engineering applications. We will discuss the potential use of DNA repair mechanisms for developing and improving methodologies to enhance genome engineering efficiency and to direct DNA repair processes toward the desired outcomes.

Indexed as

DNA Breaks, Double-StrandedDNA End-Joining RepairDNA, PlantDNA RepairGene EditingGenetic EngineeringGenome, PlantDNA, PlantAlternative end joining (altEJ)Base editor (BE)DNA repairDouble-strand break (DSB)Genome engineeringHomology-directed repair (HDR)Nonhomologous end joining (NHEJ)Single-strand break (SSB)Site-directed nuclease (SDN)

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.