Evidence map›Paper›PMID 30609992›Full record

ArticleThe EMBO journal2019

Frozen-hydrated chromatin from metaphase chromosomes has an interdigitated multilayer structure.

Andrea Chicano, Eva Crosas, Joaquín Otón, Roberto Melero, Benjamin D Engel, Joan-Ramon Daban

Abstract read
In one paragraph

Article in The EMBO journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Chromosome inner structure investigation by electron tomography and electron diffraction in a transmission electron microscope.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2021
    Review
  9. Article
  10. Review
  11. Article
  12. Mitotic chromosome organization: General rules meet species-specific variability.Computational and structural biotechnology journal · 2020
    Review
  13. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Andrea ChicanoDepartament de Bioquímica i Biologia Molecular, Facultat de Biociències, Universitat Autònoma de Barcelona, Barcelona, Spain.
Eva CrosasDepartament de Bioquímica i Biologia Molecular, Facultat de Biociències, Universitat Autònoma de Barcelona, Barcelona, Spain.
Joaquín OtónNational Center of Biotechnology (CSIC), Campus Univ. Autónoma de Madrid, Madrid, Spain.ORCID 0000-0002-2195-4730
Roberto MeleroNational Center of Biotechnology (CSIC), Campus Univ. Autónoma de Madrid, Madrid, Spain.ORCID 0000-0001-9467-9381
Benjamin D EngelDepartment of Molecular Structural Biology, Max-Planck-Institute of Biochemistry, Martinsried, Germany.ORCID 0000-0002-0941-4387
Joan-Ramon DabanDepartament de Bioquímica i Biologia Molecular, Facultat de Biociències, Universitat Autònoma de Barcelona, Barcelona, Spain joanramon.daban@uab.cat.ORCID 0000-0001-9946-6764

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cryo-electron tomography and small-angle X-ray scattering were used to investigate the chromatin folding in metaphase chromosomes. The tomographic 3D reconstructions show that frozen-hydrated chromatin emanated from chromosomes is planar and forms multilayered plates. The layer thickness was measured accounting for the contrast transfer function fringes at the plate edges, yielding a width of ~ 7.5 nm, which is compatible with the dimensions of a monolayer of nucleosomes slightly tilted with respect to the layer surface. Individual nucleosomes are visible decorating distorted plates, but typical plates are very dense and nucleosomes are not identifiable as individual units, indicating that they are tightly packed. Two layers in contact are ~ 13 nm thick, which is thinner than the sum of two independent layers, suggesting that nucleosomes in the layers interdigitate. X-ray scattering of whole chromosomes shows a main scattering peak at ~ 6 nm, which can be correlated with the distance between layers and between interdigitating nucleosomes interacting through their faces. These observations support a model where compact chromosomes are composed of many chromatin layers stacked along the chromosome axis.

Indexed as

MetaphaseChromatinChromosomes, HumanChromosome StructuresElectron Microscope TomographyFrozen SectionsHeLa CellsHumansNucleosomesChromatinNucleosomeschromatin higher‐order structurecryo‐electron tomographyDNA packagingmetaphase chromosome structuresmall‐angle X‐ray scattering

Identifiers

PMID30609992
PMCPMC6443200

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.