Evidence map›Paper›PMID 30607848›Full record

ArticleEnvironmental science and pollution research international2019

High-throughput analysis of the effects of different fish culture methods on antibiotic resistance gene abundances in a lake.

Jie Gu, Li Zhang, Xiaojuan Wang, Chunya Lu, Jiayao Liu, Yue Liu, Lichan Li, Jiayuan Peng, Mingming Xue

Abstract read
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In one paragraph

Article in Environmental science and pollution research international, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jie GuCollege of Natural Resources and Environment, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Li ZhangCollege of Natural Resources and Environment, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Xiaojuan WangCollege of Natural Resources and Environment, Northwest A&F University, Yangling, 712100, Shaanxi, China. xiaojuan7069@sina.com.ORCID http://orcid.org/0000-0003-0809-8594
Chunya LuCollege of Natural Resources and Environment, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Jiayao LiuCollege of Natural Resources and Environment, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Yue LiuCollege of Natural Resources and Environment, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Lichan LiCollege of Natural Resources and Environment, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Jiayuan PengCollege of Natural Resources and Environment, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Mingming XueCollege of Natural Resources and Environment, Northwest A&F University, Yangling, 712100, Shaanxi, China.

Funding

National Natural Science Foundation of China (CN) 41601531 and 41671474the Science and Technology Plan Key Project of Shaanxi 2017ZDCXL-SF-03-03
6 · The paper itself

Abstract

Freshwater lakes are important reservoirs for antibiotic resistance genes (ARGs). In this study, we determined the ARG profiles in water samples from Ying Lake, China, using high-throughput quantitative PCR. The high prevalence of ARGs suggested significant pollution with ARGs in the study area, where the ARG diversity and abundance were greater in an area with box-type fish farming than an area with fenced fish farming. Network analysis indicated the widespread co-occurrence of ARGs and mobile genetic elements. cphA-01, blalMP02, and blaCMY202 were identified as adequate indicator genes for estimating the total ARG abundances. Redundancy analysis indicated that changes in the microbial communities caused by variations in the physicochemical parameters with different fish culture methods mainly determined the ARGs in the lake system. Thus, analyzing the factors that affect ARGs provided novel insights into the mechanisms responsible for the maintenance and propagation of ARGs in a lake.

Indexed as

AnimalsAquacultureChinaDrug Resistance, MicrobialFishesGenes, BacterialHigh-Throughput Nucleotide SequencingInterspersed Repetitive SequencesLakesRNA, Ribosomal, 16SWater MicrobiologyRNA, Ribosomal, 16SAntibiotic resistance geneAquatic environmentBacterial communityFish culture methodNetwork analysis

Identifiers

PMID30607848

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.