Evidence map›Paper›PMID 30607602›Full record

ArticleMolecular genetics and genomics : MGG2019

The miR164-dependent regulatory pathway in developing maize seed.

Lanjie Zheng, Xiangge Zhang, Haojun Zhang, Yong Gu, Xinrong Huang, Huanhuan Huang, Hanmei Liu, Junjie Zhang, Yufeng Hu, Yangping Li and 4 more

Abstract read
PubMed Publisher
In one paragraph

Article in Molecular genetics and genomics : MGG, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
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  6. Review
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  10. Review
  11. microRNAs and Their Roles in Plant Development.Frontiers in plant science · 2022
    Review
  12. Review
  13. Article
  14. Article
  15. Epigenomic landscape and epigenetic regulation in maize.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 2 countries.

Lanjie ZhengCollege of Agronomy, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.
Xiangge ZhangCollege of Agronomy, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.
Haojun ZhangCollege of Agronomy, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.
Yong GuSichuan Yuliang Biotechnological Co. Ltd, Chengdu, 611130, Sichuan, China.
Xinrong HuangCollege of Agronomy, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.
Huanhuan HuangCollege of Agronomy, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.
Hanmei LiuCollege of Life Science, Sichuan Agricultural University, Ya'an, 625014, Sichuan, China.
Junjie ZhangCollege of Life Science, Sichuan Agricultural University, Ya'an, 625014, Sichuan, China.
Yufeng HuCollege of Agronomy, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.
Yangping LiCollege of Agronomy, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.
Guowu YuCollege of Agronomy, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.
Yinghong LiuMaize Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.
Shaneka S LawsonUSDA Forest Service, Northern Research Station, Hardwood Tree Improvement and Regeneration Center (HTIRC), Purdue University, 715 West State Street, West Lafayette, IN, 47907, USA.
Yubi HuangCollege of Agronomy, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China. yubihuang@sohu.com.
Sichuan Agricultural University · CNState Street (United States) · US

Funding

National Natural Science Foundation of China 31571684
6 · The paper itself

Abstract

MicroRNA164 (miR164) plays a key role in leaf and flower development, lateral root initiation, and stress responses. However, little is known about the regulatory roles of miR164 during seed development, particularly in maize. The aim of this study was to discover the developmental function of miR164 in maize seed. Small RNA sequencing (sRNA-seq) was performed at two key stages. The results indicated that miR164 was down-regulated during maize seed development. In addition, degradome library sequencing and transient expression assays identified the target genes for miR164. Two microRNA (miRNA) pairs, miR164-NAM, ATAF, and CUC32 (NAC32) and miR164-NAC40, were isolated. The developmental function of miR164 was determined by analyzing the differentially expressed genes (DEGs) between the wild-type and miR164 transgenic lines using RNA sequencing (RNA-seq) and by screening the DEGs related to NAC32 and NAC40 via co-expression and transient expression analysis. These results identified two beta-expansin genes, EXPB14 and EXPB15, which were located downstream of the NAC32 and NAC40 genes. This study revealed, for the first time, a miR164-dependent regulatory pathway, miR164-NAC32/NAC40-EXPB14/EXPB15, which participates in maize seed expansion. These findings highlight the significance of miR164 in maize seed development, and can be used to explore the role of miRNA in seed development.

Indexed as

ArabidopsisGene Expression Regulation, PlantGene Regulatory NetworksMicroRNAsPlant LeavesPlant ProteinsPlant RootsPlants, Genetically ModifiedSeedsSequence Analysis, RNAZea maysMicroRNAsMIRN164 microRNA, ArabidopsisPlant ProteinsMaizeMiR64NAC transcription factorRegulatory pathwaySeed development

Identifiers

PMID30607602
OpenAlexW2907410159

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.