Evidence map›Paper›PMID 30606238›Full record

ArticleGenome biology2019

Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease.

Gabriel Oh, Karolis Koncevičius, Sasha Ebrahimi, Matthew Carlucci, Daniel Erik Groot, Akhil Nair, Aiping Zhang, Algimantas Kriščiūnas, Edward S Oh, Viviane Labrie and 5 more

Abstract read
In one paragraph

Article in Genome biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Making sense of the ageing methylome.Nature reviews. Genetics · 2022
    Review
  14. Article
  15. Article
  16. Review
  17. Circadian immune circuits.The Journal of experimental medicine · 2021
    Review
  18. Article
  19. Biological embedding of experience: A primer on epigenetics.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Review
  20. Circadian Rhythms in Environmental Health Sciences.Current environmental health reports · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Gabriel OhThe Krembil Family Epigenetics Laboratory, The Campbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, Canada.
Karolis KoncevičiusInstitute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania.
Sasha EbrahimiThe Krembil Family Epigenetics Laboratory, The Campbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, Canada.
Matthew CarlucciThe Krembil Family Epigenetics Laboratory, The Campbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, Canada.
Daniel Erik GrootThe Krembil Family Epigenetics Laboratory, The Campbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, Canada.
Akhil NairThe Krembil Family Epigenetics Laboratory, The Campbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, Canada.
Aiping ZhangThe Krembil Family Epigenetics Laboratory, The Campbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, Canada.
Algimantas KriščiūnasInstitute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania.
Edward S OhThe Krembil Family Epigenetics Laboratory, The Campbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, Canada.
Viviane LabrieThe Krembil Family Epigenetics Laboratory, The Campbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, Canada.
Albert H C WongThe Krembil Family Epigenetics Laboratory, The Campbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, Canada.
Juozas GordevičiusInstitute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania.
Peixin JiaThe Krembil Family Epigenetics Laboratory, The Campbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, Canada.
Miki SusicThe Krembil Family Epigenetics Laboratory, The Campbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, Canada.
Art PetronisThe Krembil Family Epigenetics Laboratory, The Campbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, Canada. art.petronis@camh.ca.

Funding

DIVERGENT MEIOTIC RECOMBINATION IN BIPOLAR DISORDERR01MH105409 · NIMH · CENTRE FOR ADDICTION AND MENTAL HEALTH · PI PETRONIS, ART · 2014 to 2017
$988k
CIHR IGH-155180CIHR MOP-119451CIHR MOP-133496CIHR NTC-15408CIHR PJT 148719NIMH NIH HHS 1R01MH105409-01NIMH NIH HHS R01 MH105409
6 · The paper itself

Abstract

backgroundMaintenance of physiological circadian rhythm plays a crucial role in human health. Numerous studies have shown that disruption of circadian rhythm may increase risk for malignant, psychiatric, metabolic, and other diseases.

resultsExtending our recent findings of oscillating cytosine modifications (osc-modCs) in mice, in this study, we show that osc-modCs are also prevalent in human neutrophils. Osc-modCs may play a role in gene regulation, can explain parts of intra- and inter-individual epigenetic variation, and are signatures of aging. Finally, we show that osc-modCs are linked to three complex diseases and provide a new interpretation of cross-sectional epigenome-wide association studies.

conclusionsOur findings suggest that loss of balance between cytosine methylation and demethylation during the circadian cycle can be a potential mechanism for complex disease. Additional experiments, however, are required to investigate the possible involvement of confounding effects, such as hidden cellular heterogeneity. Circadian rhythmicity, one of the key adaptations of life forms on Earth, may contribute to frailty later in life.

Indexed as

Circadian RhythmEpigenesis, GeneticAgingCytosineHumansLeukemia, Lymphocytic, Chronic, B-CellMaleMiddle AgedNeutrophilsSchizophreniaCytosineAgingCircadianDiabetesDifferentiationDiseaseDNA modificationEpigeneticsLeukemiaMethylationSchizophrenia

Identifiers

PMID30606238
PMCPMC6317262

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.