Evidence map›Paper›PMID 30606100›Full record

ArticleBMC bioinformatics2019

Image-based classification of plant genus and family for trained and untrained plant species.

Marco Seeland, Michael Rzanny, David Boho, Jana Wäldchen, Patrick Mäder

Abstract read
In one paragraph

Article in BMC bioinformatics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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  4. Deep learning models map rapid plant species changes from citizen science and remote sensing data.Proceedings of the National Academy of Sciences of the United States of America · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Marco SeelandInstitute for Computer and Systems Engineering, Technische Universität Ilmenau, Helmholtzplatz 5, Ilmenau, 98693, Germany. marco.seeland@tu-ilmenau.de.ORCID http://orcid.org/0000-0001-7204-3972
Michael RzannyMax-Planck-Institute for Biogeochemistry, Department Biogeochemical Integration, Hans-Knöll-Str. 10, Jena, 07745, Germany.
David BohoInstitute for Computer and Systems Engineering, Technische Universität Ilmenau, Helmholtzplatz 5, Ilmenau, 98693, Germany.
Jana WäldchenMax-Planck-Institute for Biogeochemistry, Department Biogeochemical Integration, Hans-Knöll-Str. 10, Jena, 07745, Germany.
Patrick MäderInstitute for Computer and Systems Engineering, Technische Universität Ilmenau, Helmholtzplatz 5, Ilmenau, 98693, Germany.

Funding

German Federal Ministry for the Environment, Nature Conservation, Building and Nuclear Safety 3514 685C19German Federal Ministry of Education and Research 01LC1319AStiftung Naturschutz Thüringen SNT-082-248-03/2014
6 · The paper itself

Abstract

backgroundModern plant taxonomy reflects phylogenetic relationships among taxa based on proposed morphological and genetic similarities. However, taxonomical relation is not necessarily reflected by close overall resemblance, but rather by commonality of very specific morphological characters or similarity on the molecular level. It is an open research question to which extent phylogenetic relations within higher taxonomic levels such as genera and families are reflected by shared visual characters of the constituting species. As a consequence, it is even more questionable whether the taxonomy of plants at these levels can be identified from images using machine learning techniques.

resultsWhereas previous studies on automated plant identification from images focused on the species level, we investigated classification at higher taxonomic levels such as genera and families. We used images of 1000 plant species that are representative for the flora of Western Europe. We tested how accurate a visual representation of genera and families can be learned from images of their species in order to identify the taxonomy of species included in and excluded from learning. Using natural images with random content, roughly 500 images per species are required for accurate classification. The classification accuracy for 1000 species amounts to 82.2% and increases to 85.9% and 88.4% on genus and family level. Classifying species excluded from training, the accuracy significantly reduces to 38.3% and 38.7% on genus and family level. Excluded species of well represented genera and families can be classified with 67.8% and 52.8% accuracy.

conclusionOur results show that shared visual characters are indeed present at higher taxonomic levels. Most dominantly they are preserved in flowers and leaves, and enable state-of-the-art classification algorithms to learn accurate visual representations of plant genera and families. Given a sufficient amount and composition of training data, we show that this allows for high classification accuracy increasing with the taxonomic level and even facilitating the taxonomic identification of species excluded from the training process.

Indexed as

PhylogenyPlantsComputer visionDeep learningPlant identificationTaxonomyZero-shot classification

Identifiers

PMID30606100
PMCPMC6318858

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.