Evidence map›Paper›PMID 30605516›Full record

ArticleNucleic acids research2019

Random mutagenesis of a hyperthermophilic archaeon identified tRNA modifications associated with cellular hyperthermotolerance.

Izumi Orita, Ryohei Futatsuishi, Kyoko Adachi, Takayuki Ohira, Akira Kaneko, Keiichi Minowa, Miho Suzuki, Takeshi Tamura, Satoshi Nakamura, Tadayuki Imanaka and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 62 citations in OpenAlex.

  1. Review
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  8. A sequence-specific RNA acetylation catalyst.Nucleic acids research · 2025
    Article
  9. Review
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  11. Review
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  14. A novelProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  15. A sequence-specific RNA acetylation catalyst.bioRxiv : the preprint server for biology · 2024
    Article
  16. The extensive mNature communications · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Izumi OritaSchool of Life Science and Technology, Tokyo Institute of Technology, Midori-ku, Yokohama 226-8501, Japan.
Ryohei FutatsuishiSchool of Life Science and Technology, Tokyo Institute of Technology, Midori-ku, Yokohama 226-8501, Japan.
Kyoko AdachiSchool of Life Science and Technology, Tokyo Institute of Technology, Midori-ku, Yokohama 226-8501, Japan.
Takayuki OhiraDepartment of Chemistry and Biotechnology, Graduate School of Engineering, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan.
Akira KanekoSchool of Life Science and Technology, Tokyo Institute of Technology, Midori-ku, Yokohama 226-8501, Japan.
Keiichi MinowaDepartment of Chemistry and Biotechnology, Graduate School of Engineering, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan.
Miho SuzukiSchool of Life Science and Technology, Tokyo Institute of Technology, Midori-ku, Yokohama 226-8501, Japan.
Takeshi TamuraSchool of Life Science and Technology, Tokyo Institute of Technology, Midori-ku, Yokohama 226-8501, Japan.
Satoshi NakamuraSchool of Life Science and Technology, Tokyo Institute of Technology, Midori-ku, Yokohama 226-8501, Japan.
Tadayuki ImanakaResearch Organization of Science and Technology, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu 525-8577, Japan.
Tsutomu SuzukiDepartment of Chemistry and Biotechnology, Graduate School of Engineering, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan.
Toshiaki FukuiSchool of Life Science and Technology, Tokyo Institute of Technology, Midori-ku, Yokohama 226-8501, Japan.
Tokyo Institute of Technology · JPThe University of Tokyo · JPRitsumeikan University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Random mutagenesis for the hyperthermophilic archaeon Thermococcus kodakarensis was established by the insertion of an artificial transposon designed to allow easy identification of the transposon-inserted locus. The phenotypic screening was applied for the isolation of thermosensitive mutants of T. kodakarensis, which resulted in the isolation of 16 mutants showing defective growth at the supraoptimal temperature 93°C. The high occurrence of the mutants suggested that the high thermotolerance of hyperthermophiles was achieved by a combination of diverse gene functions. The transposon insertion sites in two-thirds of the mutants were identified in a group of genes responsible for tRNA modifications including 7-formamidino-7-deaza-guanosine (archaeosine), N1-methyladenosine/N1-methylinosine, N4-acetylcytidine, and N2-dimethylguanosine/N2,N2-dimethylguanosine. LC-MS/MS analyses of tRNA nucleosides and fragments exhibited disappearance of the corresponding modifications in the mutants. The melting temperature of total tRNA fraction isolated from the mutants lacking archaeosine or N1-methyladenosine/N1-methylinosine decreased significantly, suggesting that the thermosensitive phenotype of these mutants was attributed to low stability of the hypomodified tRNAs. Genes for metabolism, transporters, and hypothetical proteins were also identified in the thermosensitive mutants. The present results demonstrated the usefulness of random mutagenesis for the studies on the hyperthermophile, as well as crucial roles of tRNA modifications in cellular thermotolerance.

Indexed as

Base SequenceChromatography, LiquidGene Expression Regulation, ArchaealGuanosineMutagenesisNucleosidesRNA, TransferTandem Mass SpectrometryTemperatureThermococcusarchaeosineGuanosineNucleosidesRNA, Transfer

Identifiers

PMID30605516
PMCPMC6393311
OpenAlexW2907100011

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.