Evidence map›Paper›PMID 30605401›Full record

ArticleJournal of applied physiology (Bethesda, Md. : 1985)2019

Exploring the underlying biology of intrinsic cardiorespiratory fitness through integrative analysis of genomic variants and muscle gene expression profiling.

Sujoy Ghosh, Monalisa Hota, Xiaoran Chai, Jencee Kiranya, Palash Ghosh, Zihong He, Jonathan J Ruiz-Ramie, Mark A Sarzynski, Claude Bouchard

Open access · bronzeAbstract read
In one paragraph

Article in Journal of applied physiology (Bethesda, Md. : 1985), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Sujoy GhoshHuman Genomics Laboratory, Pennington Biomedical Research Center , Baton Rouge, Louisiana.ORCID 0000-0002-7601-165X
Monalisa HotaCardiovascular and Metabolic Disorders Program and Centre for Computational Biology, Duke-National University of Singapore Medical School , Singapore.
Xiaoran ChaiCardiovascular and Metabolic Disorders Program and Centre for Computational Biology, Duke-National University of Singapore Medical School , Singapore.
Jencee KiranyaCardiovascular and Metabolic Disorders Program and Centre for Computational Biology, Duke-National University of Singapore Medical School , Singapore.
Palash GhoshCenter for Quantitative Medicine, Duke-National University of Singapore Medical School , Singapore.
Zihong HeHuman Genomics Laboratory, Pennington Biomedical Research Center , Baton Rouge, Louisiana.
Jonathan J Ruiz-RamieDepartment of Exercise Science, Arnold School of Public Health, University of South Carolina , Columbia, South Carolina.
Mark A SarzynskiDepartment of Exercise Science, Arnold School of Public Health, University of South Carolina , Columbia, South Carolina.
Claude BouchardHuman Genomics Laboratory, Pennington Biomedical Research Center , Baton Rouge, Louisiana.
National University of Singapore · SGPennington Biomedical Research Center · USUniversity of South Carolina · US

Funding

Tracking & Evaluation CoreU54GM104940 · NIGMS · LSU PENNINGTON BIOMEDICAL RESEARCH CTR · PI Peter Todd Katzmarzyk · 2012 to 2026
$69.1M
South Carolina IDeA Networks of Biomedical Research (SC INBRE V)P20GM103499 · NIGMS · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI EDIE C GOLDSMITH · 2012 to 2026
$61.0M
HERITAGE STUDY: GENETICS, EXERCISE &RISK FACTORSR01HL045670 · NHLBI · LSU PENNINGTON BIOMEDICAL RESEARCH CTR · PI RANKINEN, TUOMO · 1992 to 2010
$6.8M
Transgenics CoreP30GM118430 · NIGMS · LSU PENNINGTON BIOMEDICAL RESEARCH CTR · PI GETTYS, THOMAS W · 2016 to 2020
$5.8M
HERITAGE STUDY: GENETICS, EXERCISE &RISK FACTORSR01HL047317 · NHLBI · WASHINGTON UNIVERSITY · PI RAO, DABEERU C · 1992 to 2003
$1.8M
A PROTEOMICS COMPUTATIONAL APPROACH TO PRETERM DELIVERYR01HD047321 · NICHD · YALE UNIVERSITY · PI BUHIMSCHI, IRINA A · 2004 to 2008
$1.8M
HERITAGE STUDY: GENETICS, EXERCISE &RISK FACTORSR01HL047327 · NHLBI · INDIANA UNIVERSITY BLOOMINGTON · PI SKINNER, JAMES STANFORD · 1992 to 2003
$106k
HERITAGE STUDY: GENETICS, RESP. TO EXERCISE/RISK FACTORSR01HL047323 · NHLBI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI LEON, ARTHUR S · 1992 to 2003
$100k
NHLBI NIH HHS R01 HL045670NHLBI NIH HHS R01 HL047317NHLBI NIH HHS R01 HL047323NHLBI NIH HHS R01 HL047327NICHD NIH HHS R01 HD047321NIGMS NIH HHS P20 GM103499NIGMS NIH HHS P30 GM118430NIGMS NIH HHS U54 GM104940
6 · The paper itself

Abstract

Intrinsic cardiorespiratory fitness (CRF) is defined as the level of CRF in the sedentary state. There are large individual differences in intrinsic CRF among sedentary adults. The physiology of variability in CRF has received much attention, but little is known about the genetic and molecular mechanisms that impact intrinsic CRF. These issues were explored in the present study by interrogating intrinsic CRF-associated DNA sequence variation and skeletal muscle gene expression data from the HERITAGE Family Study through an integrative bioinformatics guided approach. A combined analytic strategy involving genetic association, pathway enrichment, tissue-specific network structure, cis-regulatory genome effects, and expression quantitative trait loci was used to select and rank genes through a variation-adjusted weighted ranking scheme. Prioritized genes were further interrogated for corroborative evidence from knockout mouse phenotypes and relevant physiological traits from the HERITAGE cohort. The mean intrinsic V̇o

Indexed as

AdolescentAdultAnimalsCardiorespiratory FitnessCardiovascular Physiological PhenomenaCohort StudiesFemaleGene ExpressionGene Expression ProfilingGenomicsHumansMaleMiceMice, KnockoutMuscle, SkeletalPhysical Fitnessbioinformaticscardiovascular physiologyin silico exploration of the biology of cardiorespiratory fitnessintrinsic cardiorespiratory fitnessskeletal muscle biology

Identifiers

PMID30605401
PMCPMC6589809
OpenAlexW2906945593

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.