Evidence map›Paper›PMID 30605325›Full record

ArticleJournal of the American Chemical Society2019

Statistical Analysis of Nonuniform Volume Distributions for Droplet-Based Digital PCR Assays.

Gloria S Yen, Bryant S Fujimoto, Thomas Schneider, Jason E Kreutz, Daniel T Chiu

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Gloria S YenDepartment of Chemistry , University of Washington , Seattle , Washington 98195-1700 , United States.ORCID 0000-0001-7282-5974
Bryant S FujimotoDepartment of Chemistry , University of Washington , Seattle , Washington 98195-1700 , United States.
Thomas SchneiderDepartment of Chemistry , University of Washington , Seattle , Washington 98195-1700 , United States.
Jason E KreutzDepartment of Chemistry , University of Washington , Seattle , Washington 98195-1700 , United States.
Daniel T ChiuDepartment of Chemistry , University of Washington , Seattle , Washington 98195-1700 , United States.ORCID 0000-0003-2964-9578

Funding

Emulsion digital PCR for TKI discontinuation studiesR01EB021878 · NIBIB · UNIVERSITY OF WASHINGTON · PI CHIU, DANIEL T · 2016 to 2019
$1.5M
NIBIB NIH HHS R01 EB021878
6 · The paper itself

Abstract

We present a method to determine the concentration of nucleic acids in a sample by partitioning it into droplets with a nonuniform volume distribution. This digital PCR method requires no special equipment for partitioning, unlike other methods that require nearly identical volumes. Droplets are generated by vortexing a sample in an immiscible oil to create an emulsion. PCR is performed, and droplets in the emulsion are imaged. Droplets with one or more copies of a nucleic acid are identified, and the nucleic acid concentration of the sample is determined. Numerical simulations of droplet distributions were used to estimate measurement error and dynamic range and to examine the effects of the total volume of droplets imaged and the shape of the droplet size distribution on measurement accuracy. The ability of the method to resolve 1.5- and 3-fold differences in concentration was assessed by using simulations of statistical power. The method was validated experimentally; droplet shrinkage and fusion during amplification were also assessed experimentally and showed negligible effects on measured concentration.

Indexed as

Statistics as TopicEmulsionsLab-On-A-Chip DevicesPoisson DistributionPolymerase Chain ReactionEmulsions

Identifiers

PMID30605325
PMCPMC6383768

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.