Evidence map›Paper›PMID 30604768›Full record

ArticleNature communications2019

Completion of the cytosolic post-chorismate phenylalanine biosynthetic pathway in plants.

Yichun Qian, Joseph H Lynch, Longyun Guo, David Rhodes, John A Morgan, Natalia Dudareva

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 182 citations in OpenAlex.

  1. Integrative physiological and metabolomic study of Hirschfeldia incana under short- and medium-term lead (Pb) stress.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2026
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  10. Co-silencing ofHorticulture research · 2025
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  13. APlants (Basel, Switzerland) · 2025
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  19. Evolution of aromatic amino acid metabolism in plants: a key driving force behind plant chemical diversity in aromatic natural products.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  20. Review

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Yichun QianDepartment of Horticulture and Landscape Architecture, Purdue University, 625 Agriculture Mall Dr., West Lafayette, IN, 47907-2010, USA.
Joseph H LynchDepartment of Biochemistry, Purdue University, 175 South University St., West Lafayette, IN, 47907-2063, USA.
Longyun GuoDepartment of Biochemistry, Purdue University, 175 South University St., West Lafayette, IN, 47907-2063, USA.
David RhodesDepartment of Horticulture and Landscape Architecture, Purdue University, 625 Agriculture Mall Dr., West Lafayette, IN, 47907-2010, USA.
John A MorganDepartment of Biochemistry, Purdue University, 175 South University St., West Lafayette, IN, 47907-2063, USA.ORCID http://orcid.org/0000-0002-5326-4988
Natalia DudarevaDepartment of Horticulture and Landscape Architecture, Purdue University, 625 Agriculture Mall Dr., West Lafayette, IN, 47907-2010, USA. dudareva@purdue.edu.ORCID http://orcid.org/0000-0003-0777-7763
Purdue University West Lafayette · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In addition to being a vital component of proteins, phenylalanine is also a precursor of numerous aromatic primary and secondary metabolites with broad physiological functions. In plants phenylalanine is synthesized predominantly via the arogenate pathway in plastids. Here, we describe the structure, molecular players and subcellular localization of a microbial-like phenylpyruvate pathway for phenylalanine biosynthesis in plants. Using a reverse genetic approach and metabolic flux analysis, we provide evidence that the cytosolic chorismate mutase is responsible for directing carbon flux towards cytosolic phenylalanine production via the phenylpyruvate pathway. We also show that an alternative transcription start site of a known plastidial enzyme produces a functional cytosolic prephenate dehydratase that catalyzes the conversion of prephenate to phenylpyruvate, the intermediate step between chorismate mutase and phenylpyruvate aminotransferase. Thus, our results complete elucidation of phenylalanine biosynthesis via phenylpyruvate in plants, showing that this pathway splits from the known plastidial arogenate pathway at chorismate, instead of prephenate as previously thought, and the complete pathway is localized in the cytosol.

Indexed as

Biosynthetic PathwaysAmino Acids, DicarboxylicChorismate MutaseCyclohexanecarboxylic AcidsCyclohexenesCytosolPhenylalaninePhenylpyruvic AcidsPlantsPlastidsPrephenate DehydrataseTransaminasesTranscription Initiation SiteTyrosine3-phenylpyruvate aminotransferaseAmino Acids, DicarboxylicChorismate MutaseCyclohexanecarboxylic AcidsCyclohexenesPhenylalaninephenylpyruvic acidPhenylpyruvic AcidsPrephenate Dehydrataseprephenic acidpretyrosineTransaminasesTyrosine

Identifiers

PMID30604768
PMCPMC6318282
OpenAlexW2906735838

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.