Evidence map›Paper›PMID 30604752›Full record

ArticleNature communications2019

A switch in the poly(dC)/RmlB complex regulates bacterial persister formation.

Xu Chen, Gen Li, Xuewei Liao, Jie Fang, Bo Li, Shanshan Yu, Mingming Sun, Jun Wu, Lihao Zhang, Yi Hu and 8 more

RetractedAbstract readRetracted Publication
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors.

Xu ChenSoil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China.
Gen LiSoil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China.
Xuewei LiaoCenter for Analysis and Testing, Nanjing Normal University, Nanjing, China.
Jie FangSoil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China.
Bo LiSoil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China.
Shanshan YuSoil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China.
Mingming SunSoil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China.
Jun WuSoil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China. wujun2013@njau.edu.cn.
Lihao ZhangSoil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China.
Yi HuSoil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China.
Jiaguo JiaoSoil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China.
Ting LiuSoil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China.
Li XuSoil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China.
Xiaoyun ChenSoil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China.
Manqiang LiuSoil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China.ORCID http://orcid.org/0000-0001-6654-7795
Huixin LiSoil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China.
Feng HuSoil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China.
Kouhong SunZoonbio Biotechnology Co., Ltd, Nanjing, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial persisters are phenotypic variants that tolerate exposure to lethal antibiotics. These dormant cells are responsible for chronic and recurrent infections. Multiple mechanisms have been linked to persister formation. Here, we report that a complex, consisting of an extracellular poly(dC) and its membrane-associated binding protein RmlB, appears to be associated with persistence of the opportunistic pathogen Pseudomonas aeruginosa. Environmental stimuli triggers a switch in the complex physiological state (from poly(dC)/RmlB to P-poly(dC)/RmlB or RmlB). In response to the switch, bacteria decrease proton motive force and intracellular ATP levels, forming dormant cells. This alteration in complex status is linked to a (p)ppGpp-controlled signaling pathway that includes inorganic polyphosphate, Lon protease, exonuclease VII (XseA/XseB), and the type III secretion system. The persistence might be also an adaptive response to the lethal action of the dTDP-L-rhamnose pathway shutdown, which occurs due to switching of poly(dC)/RmlB.

Indexed as

Anti-Bacterial AgentsBacterial ProteinsDrug Resistance, BacterialExodeoxyribonucleasesHumansHydro-LyasesMicrobial Sensitivity TestsOpportunistic InfectionsPhosphorylationPoly CProtease LaPseudomonas aeruginosaPseudomonas InfectionsRhamnoseType III Secretion SystemsAnti-Bacterial AgentsBacterial ProteinsdTDPglucose 4,6-dehydrataseExodeoxyribonucleasesHydro-LyasesPoly Cpoly(dC)Protease LaRhamnoseType III Secretion Systems

Identifiers

PMID30604752
PMCPMC6318315

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.