Evidence map›Paper›PMID 30604750›Full record

ArticleNature communications2019

Lattice engineering enables definition of molecular features allowing for potent small-molecule inhibition of HIV-1 entry.

Yen-Ting Lai, Tao Wang, Sijy O'Dell, Mark K Louder, Arne Schön, Crystal S F Cheung, Gwo-Yu Chuang, Aliaksandr Druz, Bob Lin, Krisha McKee and 10 more

Abstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. The Genesis and Future Prospects of Small Molecule HIV-1 Attachment Inhibitors.Advances in experimental medicine and biology · 2022
    Review
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Review
  20. Innovation in the discovery of the HIV-1 attachment inhibitor temsavir and its phosphonooxymethyl prodrug fostemsavir.Medicinal chemistry research : an international journal for rapid communications on design and mechanisms of action of biologically active agents · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Yen-Ting LaiVaccine Research Center, NIAID, National Institutes of Health, Bethesda, MD, 20892, USA.ORCID http://orcid.org/0000-0003-3700-6417
Tao WangDepartments of Discovery Chemistry and Molecular Technologies, Bristol-Myers Squibb Research and Development, Cambridge, MA, 02142, USA.
Sijy O'DellVaccine Research Center, NIAID, National Institutes of Health, Bethesda, MD, 20892, USA.
Mark K LouderVaccine Research Center, NIAID, National Institutes of Health, Bethesda, MD, 20892, USA.ORCID http://orcid.org/0000-0001-7540-9263
Arne SchönDepartment of Biology, Johns Hopkins University, Baltimore, MD, 21218, USA.
Crystal S F CheungVaccine Research Center, NIAID, National Institutes of Health, Bethesda, MD, 20892, USA.
Gwo-Yu ChuangVaccine Research Center, NIAID, National Institutes of Health, Bethesda, MD, 20892, USA.
Aliaksandr DruzVaccine Research Center, NIAID, National Institutes of Health, Bethesda, MD, 20892, USA.
Bob LinVaccine Research Center, NIAID, National Institutes of Health, Bethesda, MD, 20892, USA.
Krisha McKeeVaccine Research Center, NIAID, National Institutes of Health, Bethesda, MD, 20892, USA.
Dongjun PengVaccine Research Center, NIAID, National Institutes of Health, Bethesda, MD, 20892, USA.
Yongping YangVaccine Research Center, NIAID, National Institutes of Health, Bethesda, MD, 20892, USA.
Baoshan ZhangVaccine Research Center, NIAID, National Institutes of Health, Bethesda, MD, 20892, USA.
Alon HerschhornDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, 02215, USA.
Joseph SodroskiDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, 02215, USA.
Robert T BailerVaccine Research Center, NIAID, National Institutes of Health, Bethesda, MD, 20892, USA.
Nicole A Doria-RoseVaccine Research Center, NIAID, National Institutes of Health, Bethesda, MD, 20892, USA.
John R MascolaVaccine Research Center, NIAID, National Institutes of Health, Bethesda, MD, 20892, USA.
David R LangleyComputer Assisted Drug Design, Bristol-Myers Squibb Research and Development, Wallingford, CT, 06492, USA.
Peter D KwongVaccine Research Center, NIAID, National Institutes of Health, Bethesda, MD, 20892, USA. pdkwong@nih.gov.

Funding

Quantitative Immunological Assays to Assess HIV Antibodies and VaccinesZICAI005010 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI PIERSON, THEODORE · 2019 to 2025
$5.6M
Computational Tools for Structural AnalysisZICAI005112 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI RAWI, REDA · 2010 to 2025
$4.1M
Enrichment of the State-1 Conformation of the HIV-1 Envelope GlycoproteinR01AI145547 · NIAID · DANA-FARBER CANCER INST · PI SODROSKI, JOSEPH G · 2019 to 2021
$2.2M
NIAID NIH HHS R01 AI145547
6 · The paper itself

Abstract

Diverse entry inhibitors targeting the gp120 subunit of the HIV-1 envelope (Env) trimer have been developed including BMS-626529, also called temsavir, a prodrug version of which is currently in phase III clinical trials. Here we report the characterization of a panel of small-molecule inhibitors including BMS-818251, which we show to be >10-fold more potent than temsavir on a cross-clade panel of 208-HIV-1 strains, as well as the engineering of a crystal lattice to enable structure determination of the interaction between these inhibitors and the HIV-1 Env trimer at higher resolution. By altering crystallization lattice chaperones, we identify a lattice with both improved diffraction and robust co-crystallization of HIV-1 Env trimers from different clades complexed to entry inhibitors with a range of binding affinities. The improved diffraction reveals BMS-818251 to utilize functional groups that interact with gp120 residues from the conserved β20-β21 hairpin to improve potency.

Indexed as

Chemical EngineeringCrystallography, X-RayDrug DesignHeLa CellsHIV-1HIV Envelope Protein gp120HIV Fusion InhibitorsHumansMolecular Docking SimulationNanoparticlesPiperazinesProtein BindingProtein ConformationProtein MultimerizationTriazolesVirus InternalizationBMS-626529HIV Envelope Protein gp120HIV Fusion InhibitorsPiperazinesTriazoles

Identifiers

PMID30604750
PMCPMC6318274

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.