Evidence map›Paper›PMID 30604646›Full record

ArticleRNA biology2019

Balancing yield, purity and practicality: a modified differential ultracentrifugation protocol for efficient isolation of small extracellular vesicles from human serum.

Scott M Langevin, Damaris Kuhnell, Melissa A Orr-Asman, Jacek Biesiada, Xiang Zhang, Mario Medvedovic, Hala Elnakat Thomas

Open access · bronzeAbstract read
In one paragraph

Article in RNA biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 92 citations in OpenAlex.

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  7. Stem cell extracellular vesicles for neuropsychiatric disorders and translation.Extracellular vesicles and circulating nucleic acids · 2026
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  11. Exosome: an overview on enhanced biogenesis by small molecules.Naunyn-Schmiedeberg's archives of pharmacology · 2025
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3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Scott M Langevina Division of Epidemiology, Department of Environmental Health , University of Cincinnati College of Medicine , Cincinnati , OH , USA.
Damaris Kuhnella Division of Epidemiology, Department of Environmental Health , University of Cincinnati College of Medicine , Cincinnati , OH , USA.
Melissa A Orr-Asmanc Division of Hematology/Oncology, Department of Internal Medicine , University of Cincinnati College of Medicine , Cincinnati , OH , USA.
Jacek Biesiadad Division of Biostatistics & Bioinformatics, Department of Environmental Health , University of Cincinnati College of Medicine , Cincinnati , OH , USA.
Xiang Zhangb Cincinnati Cancer Center , Cincinnati , OH , USA.
Mario Medvedovicb Cincinnati Cancer Center , Cincinnati , OH , USA.
Hala Elnakat Thomasb Cincinnati Cancer Center , Cincinnati , OH , USA.
University of Cincinnati Medical Center · USUniversity of Cincinnati · US

Funding

LCenter for Clinical and Translational Science and TrainingUL1TR001425 · NCATS · UNIVERSITY OF CINCINNATI · PI HEUBI, JAMES E., KISSELA, BRETT M · 2015 to 2024
$37.5M
REPRODUCTIVE AND DEVELOPMENTAL TOXICOLOGY RESEARCHP30ES006096 · NIEHS · UNIVERSITY OF CINCINNATI · PI YADAV, JAGJIT S · 1992 to 2022
$35.4M
Exosomal miRNA as Salivary Biomarkers for HPV+ Head and Neck CarcinomaR21DE027227 · NIDCR · UNIVERSITY OF CINCINNATI · PI LANGEVIN, SCOTT M. · 2017 to 2018
$439k
NCATS NIH HHS UL1 TR001425NIDCR NIH HHS R21 DE027227NIEHS NIH HHS P30 ES006096NIH HHS 2P30ES006096-26NIH HHS 5R21DE027227-02NIH HHS 5UL1TR001425-04
6 · The paper itself

Abstract

Ultracentrifugation remains the gold standard for isolation of small extracellular vesicles (sEV), particularly for cancer applications. The objective of this study was to determine if a widely used ultracentrifugation protocol for isolation of serum sEV could be modified to reduce the number of ultracentrifugation cycles and increase efficiency, while maintaining equal or better sample purity and yield. Serum was obtained from two healthy subjects. sEVs were isolated from 1 mL aliquots using three different ultracentrifugation protocols. Co-isolation of RNA carrier protein was assessed by performing Western blots for ApoA-I, ApoB, and Ago2. Small RNA-sequencing was performed on the sEV isolates, and differential detection of small ncRNA was compared across isolation protocols. Reduction from three- to two-ultracentrifuge cycles with no sucrose cushion resulted in a much higher sEV yield but also had the highest levels of lipoprotein and Ago2 contamination. However, the two-ultracentrifugation cycle protocol that incorporated a 30% sucrose cushion into the first cycle resulted in slightly higher sEV yields with lower levels of protein contamination compared to the lengthier three-ultracentrifugation cycle approach, therefore presenting a more efficient alternative approach for isolation of serum sEVs. It was also notable that there were some differences in sEV ncRNA cargo according to protocol, although it was less than expected given the differences in co-isolated RNA carrier proteins. Our results suggest that use of the modified serum sEV isolation protocol with two ultracentrifugation cycles and incorporating a 30% sucrose cushion offers a more efficient approach in terms of efficiency and purity.

Indexed as

Extracellular VesiclesUltracentrifugationBiomarkersCentrifugation, Density GradientExosomesFemaleHumansMaleMicroRNAsRNA, UntranslatedSerumBiomarkersMicroRNAsRNA, UntranslatedAgo2bloodExosomeslipoproteinmiRNAncRNApurificationsmall RNA-sequencing

Identifiers

PMID30604646
PMCPMC6380284
OpenAlexW2906829165

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.