Evidence map›Paper›PMID 30604071›Full record

ArticleMolecular genetics and genomics : MGG2019

Resolving population structure and genetic differentiation associated with RAD-SNP loci under selection in tossa jute (Corchorus olitorius L.).

Debabrata Sarkar, Avijit Kundu, Debajeet Das, Avrajit Chakraborty, Nur Alam Mandal, Pratik Satya, Pran Gobinda Karmakar, Chandan Sourav Kar, Jiban Mitra, Nagendra Kumar Singh

Abstract read
PubMed Publisher
In one paragraph

Article in Molecular genetics and genomics : MGG, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
4.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 30 citations in OpenAlex.

  1. Two Species of Wild Long-Fruited Jute (International journal of molecular sciences · 2026
    Article
  2. Article
  3. Article
  4. CountrywideFrontiers in plant science · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Response ofPlants (Basel, Switzerland) · 2020
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Debabrata SarkarBiotechnology Unit, Division of Crop Improvement, ICAR-Central Research Institute for Jute and Allied Fibres (CRIJAF), Nilganj, Barrackpore, Kolkata, West Bengal, 700 120, India. debabrata_s@yahoo.com.ORCID http://orcid.org/0000-0003-3943-9646
Avijit KunduBiotechnology Unit, Division of Crop Improvement, ICAR-Central Research Institute for Jute and Allied Fibres (CRIJAF), Nilganj, Barrackpore, Kolkata, West Bengal, 700 120, India.
Debajeet DasBiotechnology Unit, Division of Crop Improvement, ICAR-Central Research Institute for Jute and Allied Fibres (CRIJAF), Nilganj, Barrackpore, Kolkata, West Bengal, 700 120, India.
Avrajit ChakrabortyBiotechnology Unit, Division of Crop Improvement, ICAR-Central Research Institute for Jute and Allied Fibres (CRIJAF), Nilganj, Barrackpore, Kolkata, West Bengal, 700 120, India.
Nur Alam MandalBiotechnology Unit, Division of Crop Improvement, ICAR-Central Research Institute for Jute and Allied Fibres (CRIJAF), Nilganj, Barrackpore, Kolkata, West Bengal, 700 120, India.
Pratik SatyaBiotechnology Unit, Division of Crop Improvement, ICAR-Central Research Institute for Jute and Allied Fibres (CRIJAF), Nilganj, Barrackpore, Kolkata, West Bengal, 700 120, India.
Pran Gobinda KarmakarBiotechnology Unit, Division of Crop Improvement, ICAR-Central Research Institute for Jute and Allied Fibres (CRIJAF), Nilganj, Barrackpore, Kolkata, West Bengal, 700 120, India.
Chandan Sourav KarBiotechnology Unit, Division of Crop Improvement, ICAR-Central Research Institute for Jute and Allied Fibres (CRIJAF), Nilganj, Barrackpore, Kolkata, West Bengal, 700 120, India.
Jiban MitraBiotechnology Unit, Division of Crop Improvement, ICAR-Central Research Institute for Jute and Allied Fibres (CRIJAF), Nilganj, Barrackpore, Kolkata, West Bengal, 700 120, India.
Nagendra Kumar SinghRice Genome Lab, ICAR-National Research Centre on Plant Biotechnology (NRCPB), Pusa, New Delhi, 110 012, India.
Central Research Institute for Jute and Allied Fibres · INNational Research Centre on Plant Biotechnology · IN

Funding

ICAR Network Project on Transgenics in Crops (ICAR-NPTC), ICAR, New Delhi, India ICAR-NPTC-3070National Agricultural Science Fund (NASF), ICAR, New Delhi, India GB-2018
6 · The paper itself

Abstract

The genetic basis of selection for geographic adaptation and how it has contributed to population structure are unknown in tossa jute (Corchorus olitorius), an important bast fibre crop. We performed restriction site-associated DNA (RAD) sequencing-based (1115 RAD-SNPs) population genomic analyses to investigate genetic differentiation and population structure within a collection of 221 fibre-type lines from across nine geographic regions of the world. Indian populations, with relatively higher overall diversity, were significantly differentiated (based on F

Indexed as

Genetics, PopulationAdaptation, PhysiologicalCorchorusGenetic DriftGenomicsIndiaPolymorphism, Single NucleotideSelection, GeneticSequence Analysis, DNAF ST outlierGenotyping-by-sequencingPopulation genomicsPopulation structureRADseqSingle-nucleotide polymorphism

Identifiers

PMID30604071
OpenAlexW2908179443

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.