Evidence map›Paper›PMID 30603058›Full record

ArticleGenes & cancer2018

MicroRNA-messenger RNA interactions involving JAK-STAT signaling genes in colorectal cancer.

Lila E Mullany, Jennifer S Herrick, Lori C Sakoda, Wade Samowitz, John R Stevens, Roger K Wolff, Martha L Slattery

Open access · diamondAbstract read
In one paragraph

Article in Genes & cancer, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Lila E MullanyDepartment of Medicine, University of Utah, 383 Colorow, Salt Lake City, Utah.
Jennifer S HerrickDepartment of Medicine, University of Utah, 383 Colorow, Salt Lake City, Utah.
Lori C SakodaDivision of Research, Kaiser Permanente Northern California, Oakland, California.
Wade SamowitzDepartment of Pathology, University of Utah, Salt Lake City, Utah.
John R StevensDepartment of Mathematics and Statistics, Utah State University, Logan, Utah.
Roger K WolffDepartment of Medicine, University of Utah, 383 Colorow, Salt Lake City, Utah.
Martha L SlatteryDepartment of Medicine, University of Utah, 383 Colorow, Salt Lake City, Utah.
University of Utah · USKaiser Permanente · USUtah State University · US

Funding

miRNA and colorectal cancer: associations with tumor phenotype and survivalR01CA163683 · NCI · UNIVERSITY OF UTAH · PI SLATTERY, MARTHA L · 2012 to 2017
$6.5M
NCI NIH HHS R01 CA163683
6 · The paper itself

Abstract

JAK-STAT signaling influences many downstream processes that, unchecked, contribute to carcinogenesis and metastasis. MicroRNAs (miRNAs) are hypothesized as a mechanism to prevent uncontrolled growth from continuous JAK-STAT activation. We investigated differential expression between paired carcinoma and normal colorectal mucosa of messenger RNAs (mRNAs) and miRNAs using RNA-Seq and Agilent Human miRNA Microarray V19.0 data, respectively, using a negative binomial mixed effects model to test 122 JAK-STAT-signaling genes in 217 colorectal cancer (CRC) cases. Overall, 42 mRNAs were differentially expressed with a fold change of >1.50 or <0.67, remaining significant with a false discovery rate of < 0.05; four were dysregulated in microsatellite stable (MSS) tumors, eight were for microsatellite unstable (MSI)-specific tumors. Of these 54 mRNAs, 17 were associated with differential expression of 46 miRNAs, comprising 116 interactions: 16 were significant overall, one for MSS tumors only. Twenty of the 29 interactions with negative beta coefficients involved miRNA seed sequence matches with mRNAs, supporting miRNA-mediated mRNA repression; 17 of these mRNAs encode for receptor molecules. Receptor molecule degradation is an established JAK-STAT signaling control mechanism; our results suggest that miRNAs facilitate this process. Interactions involving positive beta coefficients may illustrate downstream effects of disrupted STAT activity, and subsequent miRNA upregulation.

Indexed as

cancercolorectalJAK-STATmiRNAreceptor

Identifiers

PMID30603058
PMCPMC6305104
OpenAlexW2921344997

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.