Evidence map›Paper›PMID 30602788›Full record

ArticleNature2019

Genomic insights into the 2016-2017 cholera epidemic in Yemen.

François-Xavier Weill, Daryl Domman, Elisabeth Njamkepo, Abdullrahman A Almesbahi, Mona Naji, Samar Saeed Nasher, Ankur Rakesh, Abdullah M Assiri, Naresh Chand Sharma, Samuel Kariuki and 19 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Nature, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 92 papers.

0numbers the graph read from it
0cells of the map it votes in
92citing papers in PubMed
20.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

92 citing papers in PubMed, 190 citations in OpenAlex.

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  9. Defence systems encoded by core genomic islands of seventh pandemicPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
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  13. Allelic variations and gene cluster modularity act as nonlinear bottlenecks for cholera emergence.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  14. mSphere · 2025
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  15. Whole genome sequencing and transmission analysis ofmedRxiv : the preprint server for health sciences · 2025
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  16. Article
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  18. Draft genomes of 10Microbiology resource announcements · 2024
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  20. Genomic analysis ofEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2024
    Article

32 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

29 authors at 13 institutions in 9 countries.

François-Xavier Weill *Institut Pasteur, Unité des Bactéries Pathogènes Entériques, Paris, France. francois-xavier.weill@pasteur.fr.
Daryl Domman *Wellcome Sanger Institute, Hinxton, UK.
Elisabeth NjamkepoInstitut Pasteur, Unité des Bactéries Pathogènes Entériques, Paris, France.
Abdullrahman A AlmesbahiNational Centre of Public Health Laboratories (NCPHL), Sana'a, Yemen.
Mona NajiNational Centre of Public Health Laboratories (NCPHL), Sana'a, Yemen.
Samar Saeed NasherNational Centre of Public Health Laboratories (NCPHL), Sana'a, Yemen.
Ankur RakeshEpicentre, Paris, France.
Abdullah M AssiriMinistry of Health, Riyadh, Saudi Arabia.
Naresh Chand SharmaMaharishi Valmiki Infectious Diseases Hospital, Delhi, India.
Samuel KariukiCentre for Microbiology Research, Kenya Medical Research Institute, Nairobi, Kenya.
Mohammad Reza PourshafiePasteur Institute of Iran, Department of Bacteriology, Tehran, Iran.
Jean RauzierInstitut Pasteur, Unité des Bactéries Pathogènes Entériques, Paris, France.
Abdinasir AbubakarWHO Regional Office for the Eastern Mediterranean (EMRO), Cairo, Egypt.
Jane Y CarterAmref Health Africa, Nairobi, Kenya.
Joseph F WamalaWHO, Juba, South Sudan.
Caroline SeguinMédecins Sans Frontières (MSF), Dubai, United Arab Emirates.
Christiane BouchierInstitut Pasteur, Plate-forme Génomique (PF1), Paris, France.
Thérèse MalliavinUnité de Bioinformatique Structurale, UMR 3528, CNRS; C3BI, USR 3756, Institut Pasteur, Paris, France.
Bita BakhshiDepartment of Bacteriology, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran.
Hayder H N AbulmaaliCentral Public Health Laboratory (CPHL), Baghdad, Iraq.
Dhirendra KumarMaharishi Valmiki Infectious Diseases Hospital, Delhi, India.
Samuel M NjorogeCentre for Microbiology Research, Kenya Medical Research Institute, Nairobi, Kenya.
Mamunur Rahman MalikWHO Regional Office for the Eastern Mediterranean (EMRO), Cairo, Egypt.
John KiiruCentre for Microbiology Research, Kenya Medical Research Institute, Nairobi, Kenya.
Francisco J LuqueroEpicentre, Paris, France.
Andrew S AzmanDepartment of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA.
Thandavarayan RamamurthyTranslational Health Science and Technology Institute (THSTI), Faridabad, Haryana, India.
Nicholas R Thomson *Wellcome Sanger Institute, Hinxton, UK.
Marie-Laure Quilici *Institut Pasteur, Unité des Bactéries Pathogènes Entériques, Paris, France.
Institut Pasteur · FRKenya Medical Research Institute · KETranslational Health Science and Technology Institute · INWorld Health Organization Regional Office for the Eastern Mediterranean · EGAmref Health Africa · KEBaghdad Medical City · IQCentre National de la Recherche Scientifique · FRJohns Hopkins University · USLondon School of Hygiene & Tropical Medicine · GBLos Alamos National Laboratory · USMinistry of Health · SAPasteur Institute of Iran · IRTarbiat Modares University · IR

Funding

Wellcome Trust 098051World Health Organization 001
6 · The paper itself

Abstract

Yemen is currently experiencing, to our knowledge, the largest cholera epidemic in recent history. The first cases were declared in September 2016, and over 1.1 million cases and 2,300 deaths have since been reported

Indexed as

GenomicsCholeraGenome, BacterialHumansPhylogenyVibrio choleraeYemen

Identifiers

PMID30602788
PMCPMC6420076
OpenAlexW2905948186

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.