Evidence map›Paper›PMID 30602611›Full record

ArticleJournal of virology2019

HIV Subtype and Nef-Mediated Immune Evasion Function Correlate with Viral Reservoir Size in Early-Treated Individuals.

Fredrick H Omondi, Sandali Chandrarathna, Shariq Mujib, Chanson J Brumme, Steven W Jin, Hanwei Sudderuddin, Rachel L Miller, Asa Rahimi, Oliver Laeyendecker, Phil Bonner and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed, 1 pooled it
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 1 synthesis or guideline pooled it, 54 citations in OpenAlex.

  1. Pooled it
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  15. Exosome and virus infection.Frontiers in immunology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 2 countries.

Fredrick H OmondiFaculty of Health Sciences, Simon Fraser University, Burnaby, British Columbia, Canada.
Sandali ChandrarathnaFaculty of Health Sciences, Simon Fraser University, Burnaby, British Columbia, Canada.
Shariq MujibDepartment of Medicine, University of Toronto, Toronto, Ontario, Canada.ORCID 0000-0002-6206-5622
Chanson J BrummeBritish Columbia Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada.
Steven W JinFaculty of Health Sciences, Simon Fraser University, Burnaby, British Columbia, Canada.
Hanwei SudderuddinFaculty of Health Sciences, Simon Fraser University, Burnaby, British Columbia, Canada.
Rachel L MillerFaculty of Health Sciences, Simon Fraser University, Burnaby, British Columbia, Canada.
Asa RahimiFaculty of Health Sciences, Simon Fraser University, Burnaby, British Columbia, Canada.
Oliver LaeyendeckerLaboratory of Immunoregulation, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.
Phil BonnerDepartment of Medicine, University of Toronto, Toronto, Ontario, Canada.
Feng Yun YueDepartment of Medicine, University of Toronto, Toronto, Ontario, Canada.
Erika BenkoDepartment of Medicine, University of Toronto, Toronto, Ontario, Canada.
Colin M KovacsDepartment of Medicine, University of Toronto, Toronto, Ontario, Canada.
Mark A BrockmanFaculty of Health Sciences, Simon Fraser University, Burnaby, British Columbia, Canada.ORCID 0000-0001-6432-1426
Mario OstrowskiDepartment of Medicine, University of Toronto, Toronto, Ontario, Canada mario.ostrowski@gmail.com zbrumme@sfu.ca.
Zabrina L BrummeFaculty of Health Sciences, Simon Fraser University, Burnaby, British Columbia, Canada mario.ostrowski@gmail.com zbrumme@sfu.ca.ORCID 0000-0002-8157-1037
Simon Fraser University · CAUniversity of Toronto · CAAIDS Vancouver · CANational Institutes of Health · USSt. Michael's Hospital · CA

Funding

BELIEVE: Bench to Bed Enhanced Lymphocyte Infusions to Engineer Viral EradicationUM1AI126617 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI JONES, R. BRAD, NIXON, DOUGLAS F · 2016 to 2020
$28.1M
International Studies of the Acquired Immune Deficiency Syndrome (AIDS)ZIAAI000361 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI REDD, ANDREW · 2009 to 2025
$15.8M
Genetics, dynamics and fitness of the HIV-1 latent reservoirR21AI127029 · NIAID · SIMON FRASER UNIVERSITY · PI BROCKMAN, MARK ALAN, BRUMME, ZABRINA · 2018 to 2019
$300k
NIAID NIH HHS R21 AI127029NIAID NIH HHS UM1 AI126617Wellcome Trust
6 · The paper itself

Abstract

The HIV accessory protein Nef modulates key immune evasion and pathogenic functions, and its encoding gene region exhibits high sequence diversity. Given the recent identification of early HIV-specific adaptive immune responses as novel correlates of HIV reservoir size, we hypothesized that viral factors that facilitate the evasion of such responses-namely, Nef genetic and functional diversity-might also influence reservoir establishment and/or persistence. We isolated baseline plasma HIV RNA-derived

Indexed as

AdultAnti-Retroviral AgentsCD4 AntigensCD4-Positive T-LymphocytesDown-RegulationHIVHIV InfectionsHLA AntigensHumansImmune EvasionMaleMiddle Agednef Gene Products, Human Immunodeficiency VirusVirus LatencyYoung AdultAnti-Retroviral AgentsCD4 AntigensHLA Antigensnef Gene Products, Human Immunodeficiency VirusCD4 downregulationHIV-1HIV reservoirHLA downregulationNefviral pathogenesis

Identifiers

PMID30602611
PMCPMC6401425
OpenAlexW2907172978

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.