Evidence map›Paper›PMID 30602608›Full record

ArticleJournal of virology2019

Porcine Circovirus 2 Uses a Multitude of Weak Binding Sites To Interact with Heparan Sulfate, and the Interactions Do Not Follow the Symmetry of the Capsid.

Sonali Dhindwal, Bryant Avila, Shanshan Feng, Reza Khayat

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 31 citations in OpenAlex.

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  15. The Oryx Antelope (Pathogens (Basel, Switzerland) · 2021
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  19. Cryo-EM structure of eastern equine encephalitis virus in complex with heparan sulfate analogues.Proceedings of the National Academy of Sciences of the United States of America · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Sonali DhindwalDepartment of Chemistry and Biochemistry, The City College of New York, New York, New York, USA.ORCID 0000-0002-9978-0363
Bryant AvilaDepartment of Chemistry and Biochemistry, The City College of New York, New York, New York, USA.
Shanshan FengDepartment of Chemistry and Biochemistry, The City College of New York, New York, New York, USA.
Reza KhayatDepartment of Chemistry and Biochemistry, The City College of New York, New York, New York, USA rkhayat@ccny.cuny.edu.
City College of New York · USThe Graduate Center, CUNY · US

Funding

TRD #3: An automated and streamlined pipeline for in-situ molecular microscopyP41GM103310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2012 to 2021
$14.7M
Cellular/Molecular Basis of Development: Research CenterG12MD007603 · NIMHD · CITY COLLEGE OF NEW YORK · PI PEZZANO, MARK · 2012 to 2017
$11.5M
Mechanism of cellular recognition and entry by a circovirusSC1AI114843 · NIAID · CITY COLLEGE OF NEW YORK · PI KHAYAT, REZA · 2014 to 2017
$1.4M
NIAID NIH HHS SC1 AI114843NIGMS NIH HHS P41 GM103310NIMHD NIH HHS G12 MD007603
6 · The paper itself

Abstract

Porcine circovirus 2 (PCV2) is the smallest pathogenic virus capable of autonomous replication within its host. Infections result in immunosuppression and subsequent death of the host and are initiated via the attachment of the PCV2 icosahedral capsid to heparan sulfate (HS) and chondroitin sulfate B (CSB) glycosaminoglycans on the cell surface. However, the underlying mechanism of structural recognition remains to be explored. Using heparin, a routinely used analog of heparan sulfate, we demonstrate that increasing lengths of heparin exhibit a greater affinity toward PCV2. Our competition assays indicate that dextran sulfate (8 kDa) has a higher affinity for PCV2 than heparin (12 kDa), chondroitin sulfate B (41 kDa), hyaluronic acid (1.6 MDa), and dextran (6 kDa). This suggests that polymers high in sulfate content are capable of competing with the PCV2-heparan sulfate interaction and, thus, have the potential to inhibit PCV2 infection. Finally, we visualized the interaction between heparin and the PCV2 capsid using cryo-electron microscopy single-particle analysis, symmetry expansion, and focused classification. The image reconstructions provide the first example of an asymmetric distribution of heparin on the surface of an icosahedral virus capsid. We demonstrate that each of the 60 capsid subunits that generate the T

Indexed as

AnimalsBinding SitesCapsidCapsid ProteinsCircoviridae InfectionsCircovirusGlycosaminoglycansHeparan SulfateHeparinSwineVirionCapsid ProteinsGlycosaminoglycansHeparan SulfateHeparincellular attachmentchondroitin sulfate Bcircoviruselectron microscopyfocused classificationglycosaminoglycanheparan sulfateheparinsymmetry expansion

Identifiers

PMID30602608
PMCPMC6401471
OpenAlexW2906946207

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.